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Sample GSM6806729 Query DataSets for GSM6806729
Status Public on Dec 08, 2022
Title S70433 vs FY4
Sample type genomic
 
Channel 1
Source name FY4
Organism Saccharomyces cerevisiae
Characteristics species: S. cerevisiae
strain name: FY4
genotype: prototroph
Biomaterial provider Celia Payen, Dunham Lab, University of Washington
Extracted molecule genomic DNA
Extraction protocol Extracted molecule : DNA
Extraction method : Nib and Grab
Label Cy3
Label protocol reference URL : http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
Channel 2
Source name S70433
Organism Saccharomyces cerevisiae
Characteristics strain name: S7 evolution Pop04-day33
genotype: wt prototroph
sex/mating type: diploid
species: S. cerevisiae
Biomaterial provider Celia Payen, Dunham Lab, University of Washington
Extracted molecule genomic DNA
Extraction protocol Extracted molecule : DNA
Extraction method : Nib and Grab
Label Cy5
Label protocol reference URL : http://dunham.gs.washington.edu/MDAgilentDNA.pdf
 
 
Hybridization protocol reference URL : http://dunham.gs.washington.edu/MDAgilentDNA.pdf
Scan protocol Pixel Size : 5
Scan Date : 2013-03-05
Scan Time : 09:50:39
Scanner Make : Agilent Technologies Scanner
Scanner Model : G2505C
Scanning software : ChipScan
Scanning software version : A.8.3.1
Description S70433 vs FY4
Data processing Extraction Software : Agilent Feature Extractor
Extraction Software Version : 10.5.1.1
Datafile type : Agilent result file
 
Submission date Dec 08, 2022
Last update date Dec 08, 2022
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Platform ID GPL4131
Series (1)
GSE220549 Roerr et al CGH data

Data table header descriptions
ID_REF Uniquely identifies feature/spot in array layout.
VALUE log(base 2) (R_PROCESSED_SIGNAL/G_PROCESSED_SIGNAL)
R_PROCESSED_SIGNAL The propagated feature signal in the red channel, used for computation of log ratio
G_PROCESSED_SIGNAL The propagated feature signal in the green channel, used for computation of log ratio

Data table
ID_REF VALUE R_PROCESSED_SIGNAL G_PROCESSED_SIGNAL
1 .012 5868.622 5818.072
2 -.693 17.95338 29.03126
3 -.629 17.22769 26.6476
4 -.639 17.19481 26.77772
5 -.477 17.19246 23.93137
6 -.637 16.78682 26.11086
7 -.686 16.88833 27.17574
8 -.565 16.79212 24.84881
9 -.503 16.51838 23.41397
10 -.552 18.78793 27.53685
11 -.674 17.16376 27.39002
12 -.199 1066.504 1224.436
13 .007 1004.332 999.4849
14 -.055 847.8651 881.0431
15 -.134 1076.402 1180.876
16 -.1 776.7213 832.1987
17 -.146 1032.553 1142.339
18 -.208 945.7285 1092.178
19 .082 883.6775 835.1396
20 -.423 805.7227 1080.265

Total number of rows: 45219

Table truncated, full table size 1277 Kbytes.




Supplementary file Size Download File type/resource
GSM6806729_251481011466_1_3_S70433_supplement.txt.gz 4.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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