|
| Status |
Public on Mar 01, 2023 |
| Title |
last instar (L6) Verson's glands |
| Sample type |
SRA |
| |
|
| Source name |
Verson's glands from last instar (L6) larvae
|
| Organism |
Spodoptera frugiperda |
| Characteristics |
tissue: Verson's glands from last instar (L6) larvae
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was isolated using Trizol (Molecular Research Center Inc., Cincinnati, OH).
size fractionation
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
BGISEQ-500 |
| |
|
| Data processing |
CLC Genomics Workbench v 11.0.1
Sequence reads were mapped to the genome (ZJU_Sfru_1.1) using CLC genomic benchwork (parameters- mismatch cost 2, insertion cost 3, deletion cost 3, length fraction 0.8, and similarity fraction 0.8)
Read count extraction and normalization were performed using CLC genomic benchwork
Assembly: ZJU_Sfru_1.1
Supplementary files format and content: tab-delimited text files include RPKM values for each Sample
|
| |
|
| Submission date |
Dec 14, 2022 |
| Last update date |
Mar 03, 2023 |
| Contact name |
Jin mo Koo |
| E-mail(s) |
jko256@uky.edu
|
| Organization name |
University of Kentucky
|
| Street address |
100 South Limestone Street
|
| City |
Lexington |
| State/province |
Kentucky |
| ZIP/Postal code |
40546 |
| Country |
USA |
| |
|
| Platform ID |
GPL32951 |
| Series (1) |
| GSE220983 |
Verson’s glands contribute to molting and antimicrobial response in the Fall armyworm |
|
| Relations |
| BioSample |
SAMN32234741 |
| SRA |
SRX18700818 |
