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Sample GSM69198 Query DataSets for GSM69198
Status Public on Feb 17, 2006
Title BT-474
Sample type genomic
 
Channel 1
Source name ATCC:HTB-20D
Organism Homo sapiens
Characteristics ATCC:HTB-20D
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Novagen Catalogue Number: 70605-3
Organism Homo sapiens
Characteristics Novagen Catalogue Number: 70605-3
Pooled female genomic DNA
Extracted molecule genomic DNA
Label Cy3
 
 
Description Competitive hybridization of differentially labeled pooled female genomic DNA and BT-474 genomic DNA
Data processing None
 
Submission date Aug 09, 2005
Last update date Feb 17, 2006
Contact name Ashleen Shadeo
E-mail(s) ashadeo@bccrc.ca
Organization name British Columbia Cancer Research Center
Street address 675 west 10th Ave
City Vancouver
State/province BC
ZIP/Postal code V6Z 2V9
Country Canada
 
Platform ID GPL2043
Series (1)
GSE3106 Breast Cancer Cell Lines

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Mean Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Mean Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Mean Intensity (w595) Background Mean Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 6532.11 4424.43 1213.486 3054.284 5322.61 1375.933 105.1944 18.82933 1.485879 0.6728891 0.5713168 -0.5715595
2 4555.33 3738.23 1178.218 2911.382 3381.33 832.227 80.4711 14.34783 1.560636 0.6406567 0.642134 -0.6423767
3 6732.11 4441.86 1173 2855.907 5561.11 1585.858 143.913 40.5357 1.346955 0.7422901 0.4297022 -0.4299448
4 5664.79 3998.21 1157.944 2827.556 4508.79 1168.21 125.0802 29.36081 1.482501 0.6744224 0.5680329 -0.5682756
5 4464.62 3648.08 1145.232 2803.512 3321.12 844.079 90.4529 21.4395 1.511324 0.6615604 0.5958127 -0.5960554
6 6571.81 4062.15 1162.886 2796.455 5412.81 1265.147 122.3841 34.5219 1.643379 0.6084 0.7166653 -0.716908
7 6192.36 4251.25 1149.05 2804.75 5048.86 1440.245 137.9895 45.5618 1.34652 0.7425304 0.4292354 -0.429478
8 5067.73 4144.26 1149.019 2809.759 3923.73 1339.762 116.3233 15.03021 1.124934 0.8887911 0.1698409 -0.1700836
9 5154.18 4191.23 1144.945 2815.854 4006.18 1389.229 117.5063 15.29949 1.107675 0.90264 0.1475347 -0.1477774
10 5526.49 5169.31 1145.095 2808.714 4384.49 2355.308 112.2553 55.3725 0.7150354 1.398297 -0.4839135 0.4836708
11 4916.44 3999.08 1143.145 2827.113 3778.94 1193.583 75.6786 12.21263 1.21611 0.8221554 0.2822744 -0.282517
12 6373.06 4465.22 1150.592 2810.204 5224.06 1661.222 115.4367 36.2408 1.207915 0.8277333 0.2725195 -0.2727621
13 6811.69 4530.55 1177.469 2789.094 5633.69 1741.546 180.5802 43.9708 1.242551 0.8046604 0.3133053 -0.3135479
14 5707.37 4177.16 1181 2788.529 4533.37 1388.158 130.1402 36.0896 1.254405 0.7970564 0.3270036 -0.3272463
15 6460.22 5471.84 1185.483 2782.283 5277.22 2688.343 139.2138 79.3551 0.7540084 1.326022 -0.4073474 0.4071048
16 5213.02 3772.33 1154.7 2776.3 4062.52 1000.333 113.0015 25.31888 1.559936 0.640944 0.6414871 -0.6417298
17 6111.11 3920.11 1175.575 2788.75 4935.11 1120.613 111.0678 28.38949 1.691599 0.5910572 0.7583876 -0.7586303
18 8002.03 5242.04 1168.152 2783.391 6843.03 2462.039 166.6987 67.4696 1.067602 0.9365208 0.09437443 -0.09461711
19 4302.97 3882.43 1170.362 2803.723 3133.968 1094.432 72.1569 10.48669 1.099922 0.9090022 0.1374016 -0.1376443
20 6161.48 4231.48 1163.581 2812.323 5001.48 1425.984 108.7364 34.6062 1.347226 0.7421414 0.4299914 -0.430234

Total number of rows: 104544

Table truncated, full table size 11491 Kbytes.




Supplementary data files not provided
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