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Sample GSM69199 Query DataSets for GSM69199
Status Public on Feb 17, 2006
Title MCF7
Sample type genomic
 
Channel 1
Source name ATCC:HTB-22D
Organism Homo sapiens
Characteristics ATCC:HTB-22D
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Novagen Catalogue Number: 70605-3
Organism Homo sapiens
Characteristics Novagen Catalogue Number: 70605-3
Pooled female genomic DNA
Extracted molecule genomic DNA
Label Cy3
 
 
Description Competitive hybridization of differentially labeled pooled female genomic DNA and MCF7 genomic DNA
Data processing None
 
Submission date Aug 09, 2005
Last update date Feb 17, 2006
Contact name Ashleen Shadeo
E-mail(s) ashadeo@bccrc.ca
Organization name British Columbia Cancer Research Center
Street address 675 west 10th Ave
City Vancouver
State/province BC
ZIP/Postal code V6Z 2V9
Country Canada
 
Platform ID GPL2043
Series (1)
GSE3106 Breast Cancer Cell Lines

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Mean Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Mean Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Mean Intensity (w595) Background Mean Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 7411.35 5345.71 1733.875 2629.158 5765.35 2720.714 21.37789 23.93479 1.034772 0.966198 0.04931315 -0.04960927
2 4898.32 4154.13 1929.905 2668.524 3082.817 1510.133 9.86598 14.91675 0.9968609 1.002943 -0.004535952 0.004239835
3 8477.67 5681.41 1730.802 2604.417 6843.67 3080.414 23.11213 33.6566 1.084882 0.9215705 0.1175375 -0.1178336
4 8233.55 5623.69 1659.75 2587.644 6635.05 3035.689 24.82647 41.3451 1.067306 0.9367459 0.0939742 -0.09427031
5 7146.29 5815.83 1531.582 2559.936 5662.29 3258.83 35.2751 50.4062 0.8484619 1.178361 -0.2370782 0.2367821
6 9182.81 5160.42 1467.441 2546.221 7734.81 2618.925 74.1404 44.8595 1.44221 0.6932378 0.5282816 -0.5285777
7 7582.99 6094.24 1441.5 2522.009 6161.99 3573.74 43.2924 47.7101 0.8419764 1.187438 -0.2481483 0.2478522
8 8143.43 5562.17 1425.558 2510.512 6733.93 3053.167 48.0564 40.0029 1.077011 0.9283049 0.1070333 -0.1073295
9 9170.16 6479.52 1358.057 2483.557 7818.66 3999.52 120.5034 73.9546 0.9546104 1.047333 -0.06701598 0.06671987
10 5853.83 6721.58 1308.89 2483.671 4567.83 4246.58 67.3819 82.3092 0.5252588 1.903433 -0.9288996 0.9286035
11 8232.33 5223.67 1314.674 2482.775 6933.33 2748.667 125.0047 53.9174 1.231749 0.8116873 0.3007079 -0.301004
12 10030.52 6477.09 1346.658 2506.027 8699.52 3977.09 130.6295 56.1565 1.06815 0.9360057 0.09511467 -0.09541079
13 10157.39 6684.69 1369.314 2514.2 8808.39 4179.69 109.6688 54.663 1.029094 0.9715295 0.04137405 -0.04167017
14 9715.03 6327.19 1371.625 2507.694 8350.03 3829.19 124.8044 45.5551 1.064838 0.938917 0.09063431 -0.09093042
15 10066.68 6613.07 1387.786 2493.798 8696.68 4120.57 112.1881 75.8117 1.030619 0.9700916 0.043511 -0.04380711
16 9237.39 6188.17 1371.022 2483.567 7887.39 3712.67 105.7132 68.4575 1.037406 0.9637451 0.05298027 -0.05327638
17 8519.07 5743.85 1372.583 2484.688 7148.07 3268.35 152.117 56.9781 1.067977 0.9361574 0.0948809 -0.09517702
18 11503.03 8790.53 1356.275 2474.882 10182.03 6334.03 96.2791 90.5654 0.7849761 1.273663 -0.3492794 0.3489833
19 9543.39 6471.59 1356.221 2480.147 8195.39 4000.59 103.5144 77.2589 1.000341 0.9994544 0.000491223 -0.00078734
20 1372.61 2484.39 1317.823 2467.097 65.6097 24.39014 0.890925 0.3650106 1.313579 0.7611228 0.3935029 -0.393799

Total number of rows: 104544

Table truncated, full table size 11512 Kbytes.




Supplementary data files not provided
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