|
| Status |
Public on Jan 14, 2023 |
| Title |
DNAm peripheral blood sample_2 |
| Sample type |
genomic |
| |
|
| Source name |
peripheral blood
|
| Organism |
Homo sapiens |
| Characteristics |
Sex: Female
age: 56
study: study_1
smoking_status: Former Smoker
bmi: 19.9709467120181
cd8_proportion: 0.109104596391123
cd4t_proportion: 0.265560709413678
nk_proportion: 0.0479483542819194
bcell_proportion: 0.0785464965568073
mono_proportion: 0.063390733509755
gran_proportion: 0.503204042249583
genotype_mds1: -0.0026899
genotype_mds2: -0.000789222
burden_of_psychiatric_disease: 8
total_ctq: 44
physical_abuse: Non-Exposed
sexual_abuse: Non-Exposed
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from peripheral whole blood samples according to standard procedures
|
| Label |
cy3, cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC BeadChip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Data processing |
Minfi pipline with stratified quantile normalization and subsequently beta-mixture quantile normalization. Batch effects corrected with ComBat
|
| |
|
| Submission date |
Jan 09, 2023 |
| Last update date |
Jan 14, 2023 |
| Contact name |
Natan Yusupov |
| E-mail(s) |
natan_yusupov@psych.mpg.de
|
| Organization name |
Max Planck Institute of Psychiatry
|
| Department |
Dept. Genes and Environment
|
| Street address |
Kraepelinstr. 2-10
|
| City |
Munich |
| ZIP/Postal code |
80804 |
| Country |
Germany |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE222468 |
Genome-wide DNA methylation analysis of peripheral blood samples of psychiatric patients and healthy controls |
|
