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Series GSE222468 Query DataSets for GSE222468
Status Public on Jan 14, 2023
Title Genome-wide DNA methylation analysis of peripheral blood samples of psychiatric patients and healthy controls
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary We evaluated biological aging using five epigenetic clocks (Horvath, Hannum, PhenoAge, GrimAge and DunedinPoAm) calculated from DNA methylation measured in peripheral blood cells in a trans-diagnostic psychiatric sample including healthy controls. We found that burden of psychiatric disease, represented by a weighted score, was significantly associated with biological age acceleration as measured by GrimAge and DunedinPoAm. The faster pace of aging was even further accelerated in individuals exposed to physical abuse in childhood
 
Overall design The study sample included subjects with psychiatric disorders and self-reported healthy controls of two studies conducted at the Max Planck Institute of Psychiatry in Munich, Germany: the Biological Classification of Mental Disorders study (BeCOME, registered on ClinicalTrials.gov, TRN: NCT03984084) and a subset of patients recruited for major depression from a clinical psychotherapy study (OPTIMA, registered on ClinicalTrials.gov, TRN: NCT03287362) who agreed to participate in an additional biobanking project. Epigenetic age was calcualted with Horvaths’ New Methylation Age Calculator (https://dnamage.genetics.ucla.edu/new). DunedinPoAm was calculated with the DunedinPoAm38 R package (https://github.com/danbelsky/DunedinPoAm38). Final DNA methylation data comprised of 420 subjects.

***Please note that the algorithms to calculate epigenetic age need only small part of the CpGs on the array and due to privacy concerns, a partial dataset (i.e. only the necessary CpGs (N = 1922) for the calculation of the epigentic age by the 5 tools) was included in the records.
 
Contributor(s) Yusupov N, Dieckmann L, Erhart M, Sauer S, Rex-Haffner M, Kopf-Beck J, Brückl TM, Czamara D, Binder EB
Citation(s) 37069357
Submission date Jan 09, 2023
Last update date Sep 04, 2023
Contact name Natan Yusupov
E-mail(s) natan_yusupov@psych.mpg.de
Organization name Max Planck Institute of Psychiatry
Department Dept. Genes and Environment
Street address Kraepelinstr. 2-10
City Munich
ZIP/Postal code 80804
Country Germany
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (420)
GSM6923796 DNAm peripheral blood sample_1
GSM6923797 DNAm peripheral blood sample_2
GSM6923798 DNAm peripheral blood sample_3
Relations
BioProject PRJNA922162

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE222468_RAW.tar 161.2 Mb (http)(custom) TAR
GSE222468_signal_intesities.txt.gz 4.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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