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Sample GSM6924009 Query DataSets for GSM6924009
Status Public on Jan 14, 2023
Title DNAm peripheral blood sample_214
Sample type genomic
 
Source name peripheral blood
Organism Homo sapiens
Characteristics Sex: Male
age: 23
study: study_1
smoking_status: Former Smoker
bmi: 21.7668223709128
cd8_proportion: 0.114015230082222
cd4t_proportion: 0.181720745396759
nk_proportion: 0.0336322820657525
bcell_proportion: 0.132887506010548
mono_proportion: 0.0569954699143575
gran_proportion: 0.553920021056509
genotype_mds1: -0.00557275
genotype_mds2: 0.000589455
burden_of_psychiatric_disease: 15
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from peripheral whole blood samples according to standard procedures
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC BeadChip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Minfi pipline with stratified quantile normalization and subsequently beta-mixture quantile normalization. Batch effects corrected with ComBat
 
Submission date Jan 09, 2023
Last update date Jan 14, 2023
Contact name Natan Yusupov
E-mail(s) natan_yusupov@psych.mpg.de
Organization name Max Planck Institute of Psychiatry
Department Dept. Genes and Environment
Street address Kraepelinstr. 2-10
City Munich
ZIP/Postal code 80804
Country Germany
 
Platform ID GPL21145
Series (1)
GSE222468 Genome-wide DNA methylation analysis of peripheral blood samples of psychiatric patients and healthy controls

Data table header descriptions
ID_REF
VALUE Normalized
detection_Pval

Data table
ID_REF VALUE detection_Pval
cg08067365 0.05276123 0
cg10143960 0.278468019 0
cg13587552 0.859047446 0
cg07284273 0.215756995 0
cg20462449 0.864428025 0
cg17747265 0.505078258 0
cg11781622 0.942298713 0
cg09971184 0.914509791 0
cg00695391 0.426403243 0
cg19802390 0.540758995 0
cg13947317 0.941086413 0
cg22510139 0.466044988 0
cg21789941 0.495474151 0
cg07045089 0.731763043 0
cg14084907 0.363962364 0
cg24145109 0.230820044 0
cg19694465 0.789369352 0
cg04818845 0.677339997 0
cg15211499 0.155550438 0
cg00935435 0.879785993 0

Total number of rows: 1922

Table truncated, full table size 48 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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