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Sample GSM6924069 Query DataSets for GSM6924069
Status Public on Jan 14, 2023
Title DNAm peripheral blood sample_274
Sample type genomic
 
Source name peripheral blood
Organism Homo sapiens
Characteristics Sex: Female
age: 26
study: study_2
smoking_status: Never Smoker
bmi: 18.5368203373502
cd8_proportion: 0.0649959331571009
cd4t_proportion: 0.172649096791753
nk_proportion: 0
bcell_proportion: 0.0984314913957211
mono_proportion: 0.0753452492330477
gran_proportion: 0.654444418558425
genotype_mds1: 0.00749163
genotype_mds2: -0.000399678
burden_of_psychiatric_disease: 3
physical_abuse: Non-Exposed
sexual_abuse: Non-Exposed
somatic_disease_score: 1
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from peripheral whole blood samples according to standard procedures
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC BeadChip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Minfi pipline with stratified quantile normalization and subsequently beta-mixture quantile normalization. Batch effects corrected with ComBat
 
Submission date Jan 09, 2023
Last update date Jan 14, 2023
Contact name Natan Yusupov
E-mail(s) natan_yusupov@psych.mpg.de
Organization name Max Planck Institute of Psychiatry
Department Dept. Genes and Environment
Street address Kraepelinstr. 2-10
City Munich
ZIP/Postal code 80804
Country Germany
 
Platform ID GPL21145
Series (1)
GSE222468 Genome-wide DNA methylation analysis of peripheral blood samples of psychiatric patients and healthy controls

Data table header descriptions
ID_REF
VALUE Normalized
detection_Pval

Data table
ID_REF VALUE detection_Pval
cg08067365 0.018994091 0
cg10143960 0.240373571 0
cg13587552 0.901610944 0
cg07284273 0.125636979 0
cg20462449 0.859881899 0
cg17747265 0.340189616 0
cg11781622 0.95808424 0
cg09971184 0.919949562 0
cg00695391 0.378249468 0
cg19802390 0.441757189 0
cg13947317 0.955048141 0
cg22510139 0.598435566 0
cg21789941 0.51152522 0
cg07045089 0.784535469 2.05997E-62
cg14084907 0.445476534 0
cg24145109 0.379236944 0
cg19694465 0.756978886 0
cg04818845 0.700775531 0
cg15211499 0.097102956 0
cg00935435 0.855516659 0

Total number of rows: 1922

Table truncated, full table size 47 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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