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Sample GSM6924076 Query DataSets for GSM6924076
Status Public on Jan 14, 2023
Title DNAm peripheral blood sample_281
Sample type genomic
 
Source name peripheral blood
Organism Homo sapiens
Characteristics Sex: Female
age: 58
study: study_2
smoking_status: Former Smoker
bmi: 29.4338921617786
cd8_proportion: 0.076481827015799
cd4t_proportion: 0.23943431021574
nk_proportion: 0.157325493271745
bcell_proportion: 0.0902168692640889
mono_proportion: 0.0429813179444049
gran_proportion: 0.464126524255946
genotype_mds1: -0.0160326
genotype_mds2: -0.00277093
total_ctq: 27
physical_abuse: Non-Exposed
sexual_abuse: Non-Exposed
somatic_disease_score: 1
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from peripheral whole blood samples according to standard procedures
Label cy3, cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC BeadChip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Minfi pipline with stratified quantile normalization and subsequently beta-mixture quantile normalization. Batch effects corrected with ComBat
 
Submission date Jan 09, 2023
Last update date Jan 14, 2023
Contact name Natan Yusupov
E-mail(s) natan_yusupov@psych.mpg.de
Organization name Max Planck Institute of Psychiatry
Department Dept. Genes and Environment
Street address Kraepelinstr. 2-10
City Munich
ZIP/Postal code 80804
Country Germany
 
Platform ID GPL21145
Series (1)
GSE222468 Genome-wide DNA methylation analysis of peripheral blood samples of psychiatric patients and healthy controls

Data table header descriptions
ID_REF
VALUE Normalized
detection_Pval

Data table
ID_REF VALUE detection_Pval
cg08067365 0.020529616 0
cg10143960 0.568223597 0
cg13587552 0.862865313 0
cg07284273 0.388034467 0
cg20462449 0.835946002 0
cg17747265 0.453147715 0
cg11781622 0.952592354 0
cg09971184 0.940797428 0
cg00695391 0.424208527 0
cg19802390 0.648971331 0
cg13947317 0.934969237 0
cg22510139 0.624920422 0
cg21789941 0.465107109 0
cg07045089 0.810524405 7.6974E-132
cg14084907 0.631981685 0
cg24145109 0.361328832 0
cg19694465 0.859542443 0
cg04818845 0.727546304 0
cg15211499 0.099945854 0
cg00935435 0.906953062 0

Total number of rows: 1922

Table truncated, full table size 47 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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