|
Status |
Public on Jan 14, 2023 |
Title |
DNAm peripheral blood sample_350 |
Sample type |
genomic |
|
|
Source name |
peripheral blood
|
Organism |
Homo sapiens |
Characteristics |
Sex: Female age: 29 study: study_1 smoking_status: Never Smoker bmi: 20.5694001219119 cd8_proportion: 0.0544546347716957 cd4t_proportion: 0.207396119840175 nk_proportion: 0.0342539308670445 bcell_proportion: 0.0604271816956948 mono_proportion: 0.0685771835497599 gran_proportion: 0.631826866988775 genotype_mds1: -0.00285108 genotype_mds2: -0.00214927 burden_of_psychiatric_disease: 2 total_ctq: 31 physical_abuse: Non-Exposed sexual_abuse: Non-Exposed somatic_disease_score: 0
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was extracted from peripheral whole blood samples according to standard procedures
|
Label |
cy3, cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC BeadChip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Data processing |
Minfi pipline with stratified quantile normalization and subsequently beta-mixture quantile normalization. Batch effects corrected with ComBat
|
|
|
Submission date |
Jan 09, 2023 |
Last update date |
Jan 14, 2023 |
Contact name |
Natan Yusupov |
E-mail(s) |
natan_yusupov@psych.mpg.de
|
Organization name |
Max Planck Institute of Psychiatry
|
Department |
Dept. Genes and Environment
|
Street address |
Kraepelinstr. 2-10
|
City |
Munich |
ZIP/Postal code |
80804 |
Country |
Germany |
|
|
Platform ID |
GPL21145 |
Series (1) |
GSE222468 |
Genome-wide DNA methylation analysis of peripheral blood samples of psychiatric patients and healthy controls |
|