|
| Status |
Public on Oct 26, 2005 |
| Title |
Methylation profiling of AGONAUTE4 mutant (AGO4)-2R using Msp I enzyme |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Whole plants (5 weeks old)
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
Ecotype: LER
Age: 5 weeks old
Tissue: whole plant of LER wild type
|
| Extracted molecule |
genomic DNA |
| Label |
cy3
|
| |
|
| Channel 2 |
| Source name |
Whole plants (5 weeks old)
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
Ecotype: LER
Age: 5 weeks old
Tissue: whole plant of AGO4 mutant
|
| Extracted molecule |
genomic DNA |
| Label |
cy5
|
| |
|
| |
| Description |
Channel 1 - Reference (LEX.R)
Channel 2 - Experimental (LEX.E)
|
| Data processing |
log2[(LEX.E - BG)/LEX.R Norm*] *-LEX.R Norm = background subtracted, LEX.R intensity which has been block level LOWESS normalized, excluding 'flagged' spots
|
| |
|
| Submission date |
Aug 10, 2005 |
| Last update date |
Oct 26, 2005 |
| Contact name |
Robert Tran |
| E-mail(s) |
rtran@fhcrc.org
|
| Organization name |
Fred Hutchinson cancer research center
|
| Street address |
1100 Fairview Ave N; A1-111
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98109 |
| Country |
USA |
| |
|
| Platform ID |
GPL1911 |
| Series (1) |
| GSE3109 |
Chromatin and siRNA pathways cooperate to maintain DNA methylation |
|
