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Status
Public on Mar 18, 2005
Title
FHCRC Arabidopsis Oligo Array v1.0
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Arabidopsis thaliana
Description
Operon Arabidopsis Genome Oligo Set Version 1.0 containing 26,090 70mer probes representing 26,029 Arabidopsis thaliana genes. The 26,090 probes were designed from experimentally determined or cloned genes, expressed sequence tag (EST) sequences, and predicted transcripts. A majority of the probes (26,086) were designed from the UniGene Database Build At 4 developed and maintained at the National Center of Biotechnology Information (NCBI). The other 4 probes were designed from GenBank sequences not in the UniGene Build At 4.
Submission date
Mar 14, 2005
Last update date
Apr 24, 2006
Contact name
Ryan Basom
Organization name
Fred Hutchinson Cancer Research Center
Lab
Genomics and Bioinformatics Shared Resources
Street address
1100 Fairview Ave N
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Samples (62)
GSM69359 , GSM69360 , GSM69379 , GSM69382 , GSM69385 , GSM69387
GSM69390 ,
GSM69391 ,
GSM69392 ,
GSM69393 ,
GSM69394 ,
GSM69395 ,
GSM69396 ,
GSM69397 ,
GSM69398 ,
GSM69399 ,
GSM69400 ,
GSM69401 ,
GSM69402 ,
GSM69403 ,
GSM69404 ,
GSM69405 ,
GSM69406 ,
GSM69407 ,
GSM69408 ,
GSM69409 ,
GSM69410 ,
GSM69411 ,
GSM69412 ,
GSM69413 ,
GSM94076 ,
GSM94149 ,
GSM94150 ,
GSM94151 ,
GSM94152 ,
GSM94153 ,
GSM94154 ,
GSM94158 ,
GSM94159 ,
GSM94179 ,
GSM94180 ,
GSM94181 ,
GSM94182 ,
GSM94183 ,
GSM94184 ,
GSM94185 ,
GSM94186 ,
GSM94187 ,
GSM94188 ,
GSM94189 ,
GSM94190 ,
GSM94191 ,
GSM94192 ,
GSM94193 ,
GSM94194 ,
GSM94195 ,
GSM94196 ,
GSM94197 ,
GSM94198 ,
GSM94199 ,
GSM94200 ,
GSM94201 Series (2)
GSE3109 Chromatin and siRNA pathways cooperate to maintain DNA methylation
GSE4116 The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens
Data table header descriptions ID Oligo_ID Operon Oligo ID
Description Representative Gene Description
Oligo_Type Oligo Type
Transcript_Count Transcript Count
Locus_Transcript_Count Locus Transcript Count
CLONE_ID Locus
ORF locus tag
Representative_Transcript_ID Representative Transcript ID
GB_ACC Genbank accession number
UniGeneID UniGene ID
SPOT_ID spot identifier
Data table ID Oligo_ID Description Oligo_Type Transcript_Count Locus_Transcript_Count CLONE_ID ORF Representative_Transcript_ID GB_ACC UniGeneID SPOT_ID A000001_01
A000001_01
amino acid permease I (AAP1)
I
1
1
At1g58360
At1g58360 At1g58360.1
AF031649 101
A000002_01
A000002_01
expressed protein
I
1
1
At1g26110
At1g26110 At1g26110.1
AC084221 21105
A000003_01
A000003_01
expressed protein
I
1
1
At4g04780
At4g04780 At4g04780.1
AL161501 10153
A000004_01
A000004_01
transducin / WD-40 repeat protein family
I
1
2
At1g04140
At1g04140 At1g04140.1
AY035051 21104
A000005_01
A000005_01
methionine aminopeptidase I (MAP1) -related
I
1
1
At1g13270
At1g13270 At1g13270.1
AF250961 21097
A000006_01
A000006_01
elongation factor 1B-gamma, putative (eEF-1B gamma)
I
1
1
At1g09640
At1g09640 At1g09640.1
AC000132 21085
A000007_01
A000007_01
disease resistance protein (CC-NBS-LRR class), putative
I
1
1
At1g33560
At1g33560 At1g33560.1
AC051630 21078
A000008_01
A000008_01
disease resistance protein (TIR class), putative
I
1
1
At1g17615
At1g17615 At1g17615.1
AC022492 15168
A000009_01
A000009_01
F12A21.1
I
1
1
At1g67855
At1g67855 At1g67855.1
AC008113 16848
A000010_01
A000010_01
expressed protein
I
1
1
At1g02450
At1g02450 At1g02450.1
AJ250184 10196
A000011_01
A000011_01
hypothetical protein
I
1
1
At1g17665
At1g17665 At1g17665.1
AC034257 15170
A000012_01
A000012_01
CRK1 protein -related
I
1
1
At1g54610
At1g54610 At1g54610.1
AF370510 21069
A000013_01
A000013_01
expressed protein
I
1
1
At1g33980
At1g33980 At1g33980.1
AC079286 21064
A000014_01
A000014_01
hypothetical protein
I
1
1
At1g33640
At1g33640 At1g33640.1
AC069299 16846
A000015_01
A000015_01
ribosomal protein L14p family
I
1
1
At1g17560
At1g17560 At1g17560.1
AC022492 15175
A000016_01
A000016_01
hyponastic leave 1 protein
I
1
1
At1g09700
At1g09700 At1g09700.1
AF276440 10223
A000017_01
A000017_01
expressed protein
I
1
1
At1g80040
At1g80040 At1g80040.1
AC009322 21037
A000018_01
A000018_01
F-box protein family
I
1
1
At1g12170
At1g12170 At1g12170.1
AC022522 16222
A000019_01
A000019_01
hypothetical protein
I
1
1
At1g12150
At1g12150 At1g12150.1
AC022522 16224
A000020_01
A000020_01
Ulp1 protease family
I
1
1
At1g60220
At1g60220 At1g60220.1
AC004473 21036
26474 2785 Kbytes .Supplementary data files not provided
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