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| Status |
Public on May 24, 2011 |
| Title |
1000-101555 |
| Sample type |
genomic |
| |
|
| Source name |
CUP
|
| Organism |
Homo sapiens |
| Characteristics |
gender: N/A
age: N/A
ethnicity: European
disease state: CUP
biomaterial: CUP (cancer of unknown primary)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Total DNA was isolated by standard procedures
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina labelling protocol
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| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
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| Description |
Original Sample title: 101555
|
| Data processing |
average beta value = Max(Cy5,0)/[Max(Cy3,0) + Max(Cy5,0) + 100]
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| Submission date |
Mar 22, 2011 |
| Last update date |
May 24, 2011 |
| Contact name |
Agustin F Fernandez |
| E-mail(s) |
affernandez@hca.es, agusff@gmail.com
|
| Phone |
985652411
|
| Organization name |
Oviedo University-HUCA
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| Department |
IUOPA
|
| Lab |
Epigenetics
|
| Street address |
Avenida de Roma s/n
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| City |
Oviedo |
| State/province |
Asturias |
| ZIP/Postal code |
33011 |
| Country |
Spain |
| |
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| Platform ID |
GPL9183 |
| Series (1) |
| GSE28094 |
A DNA Methylation Fingerprint of 1,628 Human Samples |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
average beta value |
| 1000-101555-CUP.Detection Pval |
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| Data table |
| ID_REF |
VALUE |
1000-101555-CUP.Detection Pval |
| AATK_E63_R |
0.48353 |
0 |
| AATK_P519_R |
0.89311 |
0 |
| AATK_P709_R |
0.91335 |
0 |
| ABCA1_E120_R |
0.03472 |
0 |
| ABCA1_P45_F |
0.07617 |
0 |
| ABCB4_E429_F |
0.91522 |
0 |
| ABCB4_P51_F |
0.88925 |
0 |
| ABCB4_P892_F |
0.94813 |
0 |
| ABCC2_E16_R |
0.73062 |
0 |
| ABCC2_P88_F |
0.55849 |
0 |
| ABCC5_P444_F |
0.02194 |
0 |
| ABCG2_P178_R |
0.04062 |
0 |
| ABCG2_P310_R |
0.01794 |
0 |
| ABL1_P53_F |
0.04202 |
0 |
| ABL2_P459_R |
0.03318 |
0 |
| ABO_E110_F |
0.06394 |
0 |
| ABO_P312_F |
0.19017 |
0.69282 |
| ACTG2_E98_R |
0.76749 |
0 |
| ACTG2_P346_F |
0.82593 |
0 |
| ACTG2_P455_R |
0.56016 |
0 |
Total number of rows: 1505
Table truncated, full table size 33 Kbytes.
| Supplementary data files not provided |
| Processed data included within Sample table |
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