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Sample GSM699238 Query DataSets for GSM699238
Status Public on Aug 04, 2011
Title peritumoral HCC, non-lymph node metastasis, patient 34
Sample type RNA
 
Source name peritumoral HCC, NLNM, patient 34
Organism Homo sapiens
Characteristics individual: patient 34
disease state: hepatocellular carcinoma (HCC)
tissue: peritumoral HCC tissues
metastasis type: non-lymph node metastasis (NLNM)
Extracted molecule total RNA
Extraction protocol Total RNA was purified from the tissue specimens using the High Pure RNA Paraffin Kit (Roche Diagnostics, Germany) according to the manufacturer’s protocol.Proteinase K digestion time was 12 hours for each sample. RNA samples were stored at -80°C until use.
Label Cy3, Cy5
Label protocol RNA with a cycle threshold (Ct) value ≤28 was used for the DASL assay.
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description formalin-fixed, paraffin-embedded specimen
peritumoral tissues of patient 34
peritumoral tissues NLNM
Data processing Scanned data were uploaded into GenomeStudio for further analysis.
 
Submission date Mar 29, 2011
Last update date Aug 04, 2011
Contact name Zuolin Xiang
E-mail(s) xzl815@sohu.com
Organization name Zhongshan Hospital, Fudan University
Street address 136 Yi Xue Yuan Road
City Shanghai
ZIP/Postal code 200032
Country China
 
Platform ID GPL5858
Series (1)
GSE28248 Gene Expression Profiling of Fixed Tissues of Lymph Node Metastasis in Hepatocellular Carcinoma

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
GI_10092618-S 20858.1283 3.79E-38
GI_10337586-S -54.7324593 5.52E-01
GI_10834981-S 5167.79325 3.47E-26
GI_10834983-S 5927.27508 8.14E-34
GI_10835001-S 13235.4588 3.79E-38
GI_10835048-S 15902.1288 3.79E-38
GI_10835156-S 11559.9166 3.79E-38
GI_10835158-S 11819.2294 3.79E-38
GI_10835160-S 6571.47313 3.79E-38
GI_10835170-S 703.57858 7.56E-02
GI_10863872-S 2240.47557 2.45E-06
GI_10863920-S 1990.24428 2.46E-05
GI_10880127-S 5058.90886 3.55E-25
GI_10938009-A 8382.2842 3.79E-38
GI_10938013-S 19589.1168 3.79E-38
GI_11038640-A 8787.18647 3.79E-38
GI_11068002-S 2250.29353 2.23E-06
GI_11321592-S 10410.4881 3.79E-38
GI_11321596-S 8502.62837 3.79E-38
GI_11342665-S 9409.85649 3.79E-38

Total number of rows: 502

Table truncated, full table size 16 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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