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Status |
Public on Jun 01, 2011 |
Title |
iPSC cultured with feeder free condition rep2 |
Sample type |
RNA |
|
|
Source name |
iPSC cultured with feeder free condition rep2
|
Organism |
Mus musculus |
Characteristics |
culture condition: iPSC cultured with feeder free condition strain: C57BL/6 cell type: induced-pluripotent stem cells
|
Biomaterial provider |
BRC and ECACC
|
Treatment protocol |
Cells were dissociating with 0.25% trypsin and lysised in Trizol solution.
|
Growth protocol |
Cells in the feeder condition were cultured on mitomycin C -treated SNL76/7 cells . miPS cells under feeder-free condition were cultured without feeder cells after adding 1000 units/ml of LIF into the media containing 15% FBS, 0.1mM NEAA, 0.1mM 2-Mercaptoethanol in DMEM (high glucose without sodium pyruvate)
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was purified for expression analysis by RNeasy mini kit (Qiagen, Washington DC, MA, http://www.qiagen.com/) after DNaseI treatment.
|
Label |
cy3
|
Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
miPS.FF2
|
Data processing |
Quantile normalization of Illumina data and B-statistic calculations were carried out using the lumi and limma packages of Bioconductor in the R statistical language.
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|
|
Submission date |
Mar 30, 2011 |
Last update date |
Jun 01, 2011 |
Contact name |
Yuki Hasegawa |
E-mail(s) |
hasegawa@gsc.riken.jp
|
Phone |
+81-45-503-9222
|
Fax |
+81-45-503-9216
|
Organization name |
RIKEN
|
Department |
OSC
|
Lab |
LSA technology development unit
|
Street address |
1-7-22
|
City |
Suehiro-cho, Tsurumi-ku |
State/province |
Yokohama-city |
ZIP/Postal code |
230-0045 |
Country |
Japan |
|
|
Platform ID |
GPL6105 |
Series (1) |
GSE28262 |
CC chemokine ligand 2 and LIF cooperatively promote pluripotency in mouse induced pluripotent cells |
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