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Sample GSM701739 Query DataSets for GSM701739
Status Public on Apr 05, 2011
Title [E-MTAB-369] Xenopus developmental stage 05 2
Sample type RNA
 
Source name whole embryo, developmental stage 05
Organism Xenopus laevis
Characteristics developmental stage: 5
genotype: wild type
organism part: whole embryo
Sex: mixed sex
Extracted molecule total RNA
Extraction protocol Total RNA extraction by RNeasy Lipid Tissue Mini Kit.
Label biotin
Label protocol One-cycle Target Labeling.
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing MAS5, default settings
 
Submission date Apr 05, 2011
Last update date Apr 05, 2011
Contact name Naoki Irie
Organization name RIKEN Center for Developmental Biology
Lab Laboratory for Evolutionary Morphology
Street address 2-2-3 Minatojima-minami Chuo-ku
City Kobe
State/province Hyogo
ZIP/Postal code 650-0047
Country Japan
 
Platform ID GPL10756
Series (2)
GSE28390 [E-MTAB-369] Transcription profiling by array of Xenopus laevis embryos at 15 different stages
GSE28391 Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis

Data table header descriptions
ID_REF
VALUE MAS5
ABS_CALL

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-3_at 386.8728098 P
AFFX-BioB-5_at 315.7601503 P
AFFX-BioB-M_at 540.7249735 P
AFFX-BioC-3_at 1226.044307 P
AFFX-BioC-5_at 985.8449883 P
AFFX-BioDn-3_at 3282.988696 P
AFFX-BioDn-5_at 2277.847328 P
AFFX-CreX-3_at 12872.37581 P
AFFX-CreX-5_at 12064.97931 P
AFFX-DapX-3_at 3642.552608 P
AFFX-DapX-5_at 380.2065525 P
AFFX-DapX-M_at 1742.168618 P
AFFX-LysX-3_at 804.9711822 P
AFFX-LysX-5_at 248.5882157 P
AFFX-LysX-M_at 322.1404445 P
AFFX-PheX-3_at 417.3205134 P
AFFX-PheX-5_at 262.5729829 P
AFFX-PheX-M_at 328.9877535 P
AFFX-r2-Bs-dap-3_at 4926.813056 P
AFFX-r2-Bs-dap-5_at 392.6205666 P

Total number of rows: 32635

Table truncated, full table size 1016 Kbytes.




Supplementary file Size Download File type/resource
GSM701739_Xl_Stage05_2.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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