|
Status |
Public on Aug 07, 2023 |
Title |
241_10 |
Sample type |
SRA |
|
|
Source name |
Human cells in mouse xenograft
|
Organisms |
Homo sapiens; Mus musculus |
Characteristics |
tissue: Meningies cell line: CH-157MN cell type: Human Meningioma genotype: Merlin-deficient treatment: No doxycycline
|
Extracted molecule |
total RNA |
Extraction protocol |
cell dissociation using collagenase and Trypsin 10X genomics single cell 3' kit, v3.1
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Description |
Merlin rescue in meningioma mouse xenografts 10X Genomics
|
Data processing |
Cell ranger v6.1.2 R studio, v4.2.1 Seurat v4.3.0 SCTransform, v0.3.5 Assembly: hg19 & mm10 Supplementary files format and content: Tab-separated values files and matrix files
|
|
|
Submission date |
Feb 02, 2023 |
Last update date |
Aug 07, 2023 |
Contact name |
Charlotte Eaton |
E-mail(s) |
charlotte.eaton@UCSF.edu
|
Organization name |
UCSF
|
Street address |
1350 3rd St.
|
City |
San Francisco |
ZIP/Postal code |
94117 |
Country |
USA |
|
|
Platform ID |
GPL25526 |
Series (1) |
GSE224347 |
Merlin rescue drives Wnt signalling |
|
Relations |
BioSample |
SAMN33020658 |
SRA |
SRX19260876 |