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Sample GSM7020171 Query DataSets for GSM7020171
Status Public on Feb 26, 2024
Title genomic DNA from Tet1-KO sperm 7
Sample type genomic
 
Source name KO sperm
Organism Mus musculus
Characteristics genotype: KO
tissue: sperm
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted using standard Phenol:Chloform extraction
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulfite converted DNA was amplified, fragmented, and hybridized to Illumina Infinium Mouse285 Methylation BeadChip 12v1-0 using standard Illumina Protocol
Scan protocol Illumina iScan System
Description Bisulfite treated
KO-1901
Data processing SeSAMe R Package
Beta values of individual probe for each individual sample. Probes that did not pass SeSAMe quality control pOOBAH approach is maksed with NA
 
Submission date Feb 02, 2023
Last update date Feb 26, 2024
Contact name Rexxi Diptya Prasasya
E-mail(s) rexxi.prasasya@pennmedicine.upenn.edu
Organization name University of Pennsylvania
Department Cell and Developmental Biology
Lab Bartolomei Lab
Street address 3400 Civic Center Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL31950
Series (2)
GSE224349 TET1 catalytic activity is required for reprogrammign of imprinting control regions and the patterning of sperm-specific hypomethylated regions [Mouse Methylation285 12v1-0 BeadChip]
GSE224459 TET1 catalytic activity is required for reprogrammign of imprinting control regions and the patterning of sperm-specific hypomethylated regions

Supplementary file Size Download File type/resource
GSM7020171_KO-1901.csv.gz 2.4 Mb (ftp)(http) CSV
GSM7020171_KO1901_Grn.idat.gz 2.6 Mb (ftp)(http) IDAT
GSM7020171_KO1901_Red.idat.gz 2.6 Mb (ftp)(http) IDAT
Processed data provided as supplementary file
Processed data are available on Series record

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