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Sample GSM74 Query DataSets for GSM74
Status Public on Nov 10, 2001
Title 5T-8DR
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name 8 day old root
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 13, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 140 5007 5210 2500 91 95 24 4864 5272 2596 87 90 20 0.973 156 918 0 -0.0056833 0.987
707002E03.y1 130 6320 6217 2000 91 96 26 4727 4532 1358 89 92 21 0.978 120 722 0 0.1395643 1.379
707002G11.y1 130 884 930 450 93 97 26 859 899 405 90 93 20 0.958 120 706 0 0.0149403 1.035
707003H06.x3 140 3191 3329 1264 94 97 26 4174 4314 1604 90 93 21 0.971 156 832 0 -0.1157713 0.766
707004B03.y1 130 821 939 433 92 95 22 885 1009 446 89 93 24 0.95 120 707 0 -0.0357403 0.921
707004G10.x1 130 7159 7390 2369 92 103 136 10651 10827 3457 89 95 52 0.976 120 742 0 -0.1674913 0.680
707001A04.x1 130 3319 3382 1027 92 104 138 7676 7722 2517 89 95 51 0.963 120 725 0 -0.3655233 0.431
707002E04.y1 130 8704 9020 2534 92 100 35 9995 9624 2221 88 93 24 0.97 120 725 0 -0.0287243 0.936
707003C01.x3 130 8218 8398 2564 93 107 132 9258 9658 3105 87 92 35 0.97 120 725 0 -0.0614803 0.868
707003H07.x2 130 1411 1565 541 94 111 169 1933 1965 671 85 97 170 0.941 120 743 0 -0.1067933 0.782
707004H03.x2 130 14304 14487 4200 95 113 214 11024 10584 2894 86 91 39 0.984 120 742 0 0.1370373 1.371
707004A11.x2 130 5909 5770 2062 93 111 220 5836 5537 1888 85 90 40 0.98 120 708 0 0.0174513 1.041
707001C09.x1 140 1403 1407 494 90 97 40 1299 1356 444 86 90 23 0.946 156 837 0 0.0157793 1.037
707002B05.y1 130 2143 2219 491 87 92 24 3661 3834 938 86 90 21 0.96 120 707 0 -0.2448883 0.569
707003C02.x2 140 2111 2192 1041 87 93 28 7300 7674 3820 85 89 23 0.962 156 826 0 -0.5575203 0.277
707003H08.x4 130 1384 1456 478 87 93 27 1740 1893 727 85 91 26 0.959 120 723 0 -0.1209043 0.757
707004G04.x2 130 4013 4161 1319 87 94 28 4735 4548 1331 86 91 27 0.975 120 724 0 -0.0395293 0.913
707004D11.y1 130 3047 2986 718 89 95 30 3822 3854 933 85 90 27 0.974 120 712 0 -0.1140743 0.769
707001E11.x1 130 10190 10970 3960 91 105 143 9698 10372 3529 86 93 30 0.976 120 741 0 0.0244863 1.058
707002F05.y1 130 6246 6050 1607 92 105 137 7300 7191 1965 85 92 28 0.979 120 807 0 -0.0767563 0.838

Total number of rows: 5760

Table truncated, full table size 541 Kbytes.




Supplementary data files not provided
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