|
| Status |
Public on Oct 25, 2012 |
| Title |
Ovarian cancer tissue from Taiwan LD116 |
| Sample type |
genomic |
| |
|
| Source name |
Ovarian Cancer tissue
|
| Organism |
Homo sapiens |
| Characteristics |
histotype: Clear Cell
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Tumor genomic DNAs were extracted by using phenol-chloroform extraction method. Tumor RNAs were extracted by using Qiazol followed by column clean-up using miRNeasy kit (Qiagen).
|
| Label |
Biotin
|
| Label protocol |
As per manufacturer (Affymetrix)
|
| |
|
| Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
|
| Scan protocol |
Affymetrix standard procedure
|
| Description |
Epithelial ovarian cancers
primary_data_description: Log relative ratio calclulated by Affymetric Genotyping Console
|
| Data processing |
CEL files and CHP files are processed and normalized with Hapmap CHB using the Affymetric Genotyping Console.
|
| |
|
| Submission date |
Jun 29, 2011 |
| Last update date |
Oct 25, 2012 |
| Contact name |
Liang Goh |
| E-mail(s) |
liang.goh@duke-nus.edu.sg
|
| Organization name |
Duke-NUS graduate medical school
|
| Street address |
College Road
|
| City |
Singapore |
| ZIP/Postal code |
169857 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL6801 |
| Series (2) |
| GSE30300 |
The histotype-specific copy-number landscape of ovarian cancer (copy number SNP) |
| GSE30311 |
The histotype-specific copy-number landscape of ovarian cancer |
|
