|
| Status |
Public on Jul 24, 2023 |
| Title |
intact Hi-C from placenta (ENCLB031OLS) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens female embryo placenta tissue
|
| Organism |
Homo sapiens |
| Characteristics |
tissue_type: placenta
biomaterial_type: tissue
biosample encode accession: ENCBS222TFY (SAMN35124158)
encode accession: ENCBS222TFY
Sex: female
dev stage: embryonic
donor_id: ENCDO818SNP
lab: John Stamatoyannopoulos, UW
source: John Stamatoyannopoulos
link: ENCBS222TFY at ENCODE; https://www.encodeproject.org/ENCBS222TFY/
link: derived from ENCODE donor ENCDO818SNP; https://www.encodeproject.org/ENCDO818SNP/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/4dfd0b02-ed3a-4461-b0f5-9ef51570af1f/@@download/attachment/intacthi-c_modularprotocol-release.pdf
|
| |
|
| Library strategy |
Hi-C |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
NextSeq 2000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR395DZW/
***************
biological replicate number: 1
technical replicate number: 2
description: human placenta intact hi-c dnase
experiment encode accession: ENCSR395DZW
assay title: intact Hi-C
assembly: GRCh38
encode release date: 2023-04-26
lab: Erez Aiden, Baylor
library encode accession: ENCLB031OLS
fragmentation methods: chemical (DNaseI)
size range: 100-400
nucleic acid starting quantity: 3
nucleic acid starting quantity units: mg
instrument model: Ultima Genomics
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Jul 14, 2023 |
| Last update date |
Jul 26, 2023 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL30173 |
| Series (1) |
| GSE237343 |
intact Hi-C from placenta (ENCSR395DZW) |
|
| Relations |
| BioSample |
SAMN35124158 |
| SRA |
SRX21154565 |
