|
| Status |
Public on Jul 17, 2024 |
| Title |
genomic DNA from ID 0003 for 'b' visit |
| Sample type |
genomic |
| |
|
| Source name |
peripheral whole blood
|
| Organism |
Homo sapiens |
| Characteristics |
participant_id: 0003
visit: b
institute: KCL
age: 27.71388889
Sex: M
cd8t: 0.140642508939063
cd4t: 0.197938074963897
bcell: 0.0608022342373916
gran: 0.532222309707589
mono: 0.0794055065754302
nk: 0.0165444940880789
days.on.clozapine: 42
smokingscore: 0.778521295727892
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Approximately 500ng of blood-derived DNA from each sample was treated with sodium bisulfite in duplicate, using the EZ-96 DNA methylation kit (Zymo Research, CA, USA)
|
| Label |
Cy3, Cy5
|
| Label protocol |
KCL samples were profiled using the Illumina Infinium HumanMethylation450 BeadChip and UMC samples were profiled using the Illumina Infinium HumanMethylationEPIC BeadChip
|
| |
|
| Hybridization protocol |
standard Illumina protocol
|
| Scan protocol |
illumina iScan
|
| Description |
0003b
3998567005_R02C01
|
| Data processing |
waterMelon
wateRmelon::dasen() normalised Average Beta
|
| |
|
| Submission date |
Jul 17, 2023 |
| Last update date |
Jul 17, 2024 |
| Contact name |
Emma Walker |
| E-mail(s) |
e.m.walker@exeter.ac.uk
|
| Organization name |
University of Exeter
|
| Street address |
RILD Barrack Rd
|
| City |
Exeter |
| ZIP/Postal code |
EX2 5DW |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE237561 |
Longitudinal changes in DNA methylation associated with clozapine use in treatment-resistant schizophrenia from two international cohorts |
|
