|
| Status |
Public on Apr 23, 2024 |
| Title |
RNAseq_Mouse_SR_ATRA_1 |
| Sample type |
SRA |
| |
|
| Source name |
murine sgUtx;SR APL cells
|
| Organism |
Mus musculus |
| Characteristics |
cell line: murine sgUtx;SR APL cells
cell type: APL cells
genotype: sgUtx;STRN3-RARA
treatment: 200nM ATRA
time: 5 days
|
| Growth protocol |
BM cells harvested from the patient.
APL cells from murine sgUtx;SR.
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNA was extracted with Trizol
RNA-seq libraries were constructed by Illumina Stranded mRNA Sample Preparation Kit (NEB, Cat#E7770) according to the manufacturer’s protocol,
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
1_mouse_SR_Drug_vs_Veh_result.csv
|
| Data processing |
Sequenced reads were mapped to hg19 whole genome using STAR
Sequenced reads were mapped to mm10 whole genome using STAR
Assembly: hg19; mm10
Supplementary files format and content: txt files with gene counts
|
| |
|
| Submission date |
Jul 26, 2023 |
| Last update date |
Apr 23, 2024 |
| Contact name |
Xaingyu Pan |
| E-mail(s) |
pangxueyu233@outlook.com
|
| Organization name |
Sichuan University
|
| Department |
State Key Laboratory of Biotherapy, West China Hospital, Sihcuan University.
|
| Lab |
Chen & Liu Lab
|
| Street address |
No.17 Renming road section3
|
| City |
Chengdu, Cihna |
| State/province |
Sichuan |
| ZIP/Postal code |
610041 |
| Country |
China |
| |
|
| Platform ID |
GPL24247 |
| Series (2) |
| GSE224816 |
Identifying STRN3-RARA as a new fusion gene for acute promyelocytic leukemia |
| GSE239350 |
Identifying STRN3-RARA as a new fusion gene for acute promyelocytic leukemia [RNA-seq 2] |
|
| Relations |
| BioSample |
SAMN36716108 |
| SRA |
SRX21164560 |
