|
| Status |
Public on Aug 28, 2023 |
| Title |
26636 |
| Sample type |
genomic |
| |
|
| Source name |
blood
|
| Organism |
Canis lupus familiaris |
| Characteristics |
phenotype: Invasive Urothelial Carcimona
breed: Shetland Sheepdog
age: 9.2
gender: female
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from whole blood using Proteinase K and phenol/chloroform with standard protocols.
|
| Label |
Cy3 and Cy5
|
| Label protocol |
200ng of genomic DNA was amplified in an overnight reaction at 37oC. The amplified DNA was enzymatically fragmented, precipitated with isopropanol, and resuspended in hybridization buffer.
|
| |
|
| Hybridization protocol |
Resuspended DNA was loaded onto BeadChips arrays and hybridized overnight at at 48oC. Single-base extension and allele-specific staining was performed by hand.
|
| Scan protocol |
After allele-specific staining BeadChip arrays were coated with XC4/ethanol , dried for 1 hour and scanned on a BeadArray Reader (Illumina).
|
| Data processing |
Image data was analyzed using GenomeStudio with GT module (Illumina).
genotypes AA, AB, BB, NC=no call
|
| |
|
| Submission date |
Aug 21, 2023 |
| Last update date |
Aug 28, 2023 |
| Contact name |
Heidi G Parker |
| E-mail(s) |
hgparker@mail.nih.gov
|
| Organization name |
NHGRI
|
| Department |
CGB
|
| Lab |
CGS
|
| Street address |
50 South Dr. Rm 5347
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20874 |
| Country |
USA |
| |
|
| Platform ID |
GPL17481 |
| Series (1) |
| GSE241367 |
Association analysis of invasive urinary carcinoma in the Shetland sheepdogs and related breeds. |
|
