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Sample GSM772782 Query DataSets for GSM772782
Status Public on Jan 15, 2014
Title ChIP-Seq analysis of H3K4me3 in human CD15 cells; Lib EpiLabSPL Row 1797
Sample type SRA
Source name flow sorted CD15+ cells from cord blood; Lib EpiLabSPL Row 1797
Organism Homo sapiens
Characteristics sample alias: 28.0
sample common name: CD15 Primary Cells
molecule: genomic DNA
disease: none
biomaterial_provider: FHCRC
biomaterial_type: Primary Cell
cell_type: CD15 Primary Cells
markers: CD15+
donor_id: 23.0
donor_age: NA
donor_health_status: none
donor_sex: Male
donor_ethnicity: NA
passage_if_expanded: NA
chip_protocol_bead_type: Protein A-Sepharose 4B
chip_antibody: H3K4me3
chip_protocol_chromatin_amount: 10 million cells
extraction_protocol: SDS lysis
chip_protocol_antibody_amount: 2-15 ug
chip_protocol_bead_amount: 70 ul bed volume
chip_protocol: Bernstein_BROAD_ENCODE_protocol
extraction_protocol_sonication_cycles: 1
chip_antibody_catalog: 07-473
chip_antibody_provider: Millipore
chip_antibody_lot: DAM1623866
experiment_type: Histone H3K4me3
extraction_protocol_type_of_sonicator: Bioruptor
Extracted molecule genomic DNA
Extraction protocol Library construction protocol: Single read - Illumina
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer IIx
Description sample_term_id: CL_0000775
assay_term_id: OBI_0000716
nucleic_acid_term_id: SO_0000352
Design description: Human Chromatin IP REMC Sequencing on Illumina
Library name: Lib EpiLabSPL Row 1797
EDACC Genboree Experiment Page:
EDACC Genboree Sample Page:
For data usage terms and conditions, please refer to:
Data processing Various levels of processed data files will be made available as this project proceeds.
Submission date Aug 03, 2011
Last update date May 15, 2019
Organization name Broad Institute
Street address -
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platform ID GPL10999
Series (1)
GSE17312 BI Human Reference Epigenome Mapping Project
SRA SRX088697
BioSample SAMN00012132

Supplementary data files not provided
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Raw data not provided for this record
Raw data are available in SRA

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