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Series GSE17312 Query DataSets for GSE17312
Status Public on Aug 05, 2009
Title BI Human Reference Epigenome Mapping Project
Project Roadmap Epigenomics
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by array
Summary The NIH Roadmap Epigenomics Mapping Consortium aims to produce a public resource of epigenomic maps for stem cells and primary ex vivo tissues selected to represent the normal counterparts of tissues and organ systems frequently involved in human disease.

Characterization of the reference epigenome in humans by use of ChIP-Seq in a diverse panel of ES cells, tissue stem cells, reprogrammed stem cells, primary cells and tissues


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For data usage terms and conditions, please refer to:
http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies
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Overall design BI Human Reference Epigenome Mapping Project - samples and experiments will continue to be added to this study over the course of the project.

EDACC Genboree Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FBroad%2FSTUDY%2FEDACC.949
Web link http://www.ncbi.nlm.nih.gov/geo/roadmap/epigenomics/
 
Contributor(s) Bernstein BE, Meissner A
Citation(s) 20944595
BioProject PRJNA34535
Submission date Jul 24, 2009
Last update date Nov 05, 2019
Contact name BROAD INSTITUTE
E-mail(s) rharris1@bcm.tmc.edu
Organization name Broad Institute
Street address -
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platforms (4)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (633)
GSM433167 ChIP-Seq Analysis of H3K27me3 in hESC H1 Cells, 30CMAAAXX081006-2-S
GSM433170 ChIP-Seq Analysis of H3K4me3 in hESC H1 Cells, 30CMAAAXX081006-5-S
GSM433171 ChIP-Seq analysis of H3K9ac in human H1 cells, 30H81AAXX090613-6-S
Relations
SRA SRP000996

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17312_RAW.tar 223.9 Gb (http)(custom) TAR (of BAM, BED, CEL, WIG)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA
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