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Sample GSM77503 Query DataSets for GSM77503
Status Public on Apr 14, 2006
Title 1EP17
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.26 6355 6336 2051 765 775 178 52 340 4942 5108 1770 275 275 77 52 340
G000001-2 0.215 5975 6002 1953 738 750 181 52 340 4763 4740 1689 252 266 79 52 340
G000001-3 0.25 6868 6736 1555 736 748 172 52 340 5423 5451 1334 265 272 76 52 340
G000002-1 0.174 19217 20032 3144 699 731 296 52 420 16678 16623 2563 266 274 84 52 420
G000002-2 0.308 19690 19453 3465 684 711 294 52 420 15617 15705 3742 265 274 74 52 420
G000002-3 0.267 20094 19722 4847 680 687 157 52 420 16409 16061 4051 270 278 88 52 420
G000003-1 0.071 11941 11596 2916 675 696 214 52 340 11011 10766 2997 283 292 88 52 340
G000003-2 0.074 11222 10953 2924 710 743 220 52 340 10265 10503 2304 281 289 85 52 340
G000003-3 -0.067 11205 11316 3764 719 747 238 52 340 11255 10912 3255 274 291 125 52 340
G000004-1 0.083 16070 16021 3210 689 713 166 52 340 14807 14462 3444 283 290 91 52 340
G000004-2 0.079 16222 16063 3288 710 725 171 52 340 14957 14923 2631 269 282 93 52 340
G000004-3 0.158 16734 16271 3739 717 722 165 52 340 14646 14765 2633 286 294 86 52 340
G000005-1 0.335 27166 27040 8648 689 714 195 52 340 21280 21362 6177 284 288 78 52 340
G000005-2 0.263 26201 25894 7400 707 723 191 52 340 21526 20711 4897 274 288 91 52 340
G000005-3 0.38 28610 26215 8496 743 755 204 52 340 21702 21021 4874 283 304 156 52 340
G000006-1 0.19 20659 20240 3816 620 626 155 52 340 17822 17437 2402 261 269 76 52 340
G000006-2 0.164 20448 20267 4677 631 650 160 52 340 17962 17614 3164 271 269 78 52 340
G000006-3 0.168 22250 22065 5941 658 672 180 52 340 19496 18886 4133 279 289 99 52 340
G000007-1 0.098 11183 10382 4587 763 772 194 52 340 10001 8723 4145 262 278 86 52 340
G000007-2 0.226 12884 13051 2836 718 740 190 32 236 10657 10956 2742 258 270 76 32 236

Total number of rows: 19395

Table truncated, full table size 1617 Kbytes.




Supplementary data files not provided
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