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Series GSE3435 Query DataSets for GSE3435
Status Public on Apr 14, 2006
Title Human ependymomas.
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Keywords: Repeat sample.
 
Overall design Tumor DNA (Cy3) was hybridized against a single standard reference DNA-pool (Cy5) of the opposite sex than the patient.
 
Contributor(s) Mendrzyk F
Citation(s) 16609018
Submission date Oct 11, 2005
Last update date Mar 16, 2012
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platforms (1)
GPL2920 DKFZ Homo sapiens 6k-array, version 3/4, upgrade
Samples (68)
GSM77088 1EP1
GSM77089 1EP2
GSM77090 1EP3
Relations
BioProject PRJNA93471

Final filtered log ratios of the corresponding tumors (Cy3/Cy5) header descriptions
ID
1EP1
1EP2
1EP3
1EP5
1EP7
1EP8
1EP9
1EP10
1EP11
1EP12
1EP13
1EP14
1EP15
1EP16
1EP17
1EP19
1EP21
1EP22
1EP23
1EP24
1EP25
1EP26
1EP29
1EP32
1EP33
1EP36
1EP37
1EP39
2EP1
2EP2
2EP3
2EP5
2EP6
2EP7
2EP8
2EP9
2EP10
2EP11
2EP12
2EP13
2EP15
2EP16
2EP17
2EP18
2EP19
2EP20
2EP21
2EP22
2EP23
2EP24
2EP25
2EP27
2EP28
2EP29
2EP30
2EP31
2EP32
2EP34
2EP35
2EP36
1EP4
1EP20
1EP31
1EP38
2EP4
2EP14
2EP26
2EP33

Data table
ID 1EP1 1EP2 1EP3 1EP5 1EP7 1EP8 1EP9 1EP10 1EP11 1EP12 1EP13 1EP14 1EP15 1EP16 1EP17 1EP19 1EP21 1EP22 1EP23 1EP24 1EP25 1EP26 1EP29 1EP32 1EP33 1EP36 1EP37 1EP39 2EP1 2EP2 2EP3 2EP5 2EP6 2EP7 2EP8 2EP9 2EP10 2EP11 2EP12 2EP13 2EP15 2EP16 2EP17 2EP18 2EP19 2EP20 2EP21 2EP22 2EP23 2EP24 2EP25 2EP27 2EP28 2EP29 2EP30 2EP31 2EP32 2EP34 2EP35 2EP36 1EP4 1EP20 1EP31 1EP38 2EP4 2EP14 2EP26 2EP33
G000001 0.035239535 0.298809726 -0.039875291 0.075319656 0.188859471 0.10408235 0.284927899 0.243026445 0.187630397 -0.153961891 -0.012077824 0.088173943 -0.211346451 -0.181378038 -0.049642792 0.277070073 0.069859199 -0.197391761 0.020012236 -0.093854805 -0.061225033 -0.062283881 0.14472217 -0.232852997 -0.25915608 0.011405549 -0.208573773 -0.20534802 0.220758454 0.392929154 0.062688301 -0.190234756 0.037979028 0.251083482 -0.140247207 -0.055722156 -0.250581101 0.073698654 -0.265080885 -0.009891686 -0.03086584 0.021179597 0.07680286 0.129169739 0.112798692 -0.066407145 -0.118573009 0.610091375 0.002094237 -0.11305497 0.006830117 -0.069576076 0.643051136 0.043011369 -0.207138282 0.041862759 -0.136043479 -0.274011159 -0.138735276 -0.025260651 0.019768747
G000002 -0.019111648 -0.201364895 0.142219647 -0.015992161 0.028050878 -0.020198596 -0.018706045 0.030887401 0.075013259 0.134723068 0.201886034 -0.151541052 -0.201926653 -0.215031696 -0.353515299 -0.185092183 -0.022132892 -0.065663929 0.084755625 -0.202216972 0.088118252 0.023514149 -0.002078567 0.163213037 -0.171947458 -0.064947995 -0.089273435 0.226192874 0.021347387 0.007993553 0.240655711 0.313031884 0.042877671 0.031752871 -0.098424696 0.020890292 0.013103901 -0.620015581 -0.07349942 -0.556310563 -0.127268407 0.055827387 -0.428942716 -0.03332061 -0.096408465 0.009497547 0.045700328 -0.061967608 0.021369565 -0.083811608 0.032108523 0.025180952 -0.132157883 -0.050535291 0.124766365 0.033082329 0.005778048 0.321523157 0.038263038 0.011960229 -0.222701688 -0.173635136 -0.207717703 -0.107325324 0.014419583 -0.12798907 -0.079100012 -0.147487515
G000003 0.012401602 -0.171997727 0.093301472 0.022918355 0.161121487 0.151465855 -0.015717406 0.162363638 0.220798939 0.152739462 0.113724429 -0.092930388 -0.003713294 -0.056679905 -0.156832819 -0.055345274 0.088401961 -0.102417748 0.115300143 -0.107774357 0.143188071 0.115116822 0.070206976 0.07394983 -0.166952443 -0.082128985 -0.025477373 0.139477463 0.139930717 0.029345181 0.242868049 0.306352349 -0.06834076 -0.103978825 -0.158063274 -0.108627415 -0.280567032 -0.334634769 -0.053465708 -0.097388351 -0.027940937 0.016897189 -0.014217608 -0.00184748 0.036321314 -0.109648043 0.166587505 -0.084603425 0.106473097 0.151411003 -0.026102256 0.143771759 0.039688029 0.036595755 -0.045434395 -0.19883185 -0.108453183 -0.145751128 0.160629894 -0.199360276 -0.017252475 -0.070177951
G000004 -0.189438246 -0.119378086 -0.045398466 -0.140322752 0.139519457 -0.034590987 -0.14615634 -0.015682024 0.025928437 0.056516717 -0.138395143 -0.189163686 -0.120796229 -0.251843322 -0.027158237 -0.036986242 -0.278483764 -0.072448717 -0.135002713 0.021249556 0.094371323 0.048183312 0.025084289 0.017752349 -0.002919992 -0.026106976 -0.005758702 -0.256429599 0.137195353 0.244020413 -0.038030947 -0.060580897 -0.248676001 -0.047792574 0.004204961 -0.629233725 -0.057318703 -0.498530902 -0.163105553 0.013205148 -0.27654315 -0.127672276 -0.229168886 -0.036312607 0.045775193 -0.047088762 -0.210992454 -0.099829936 -0.162448012 0.002712584 -0.087885763 -0.054704158 -0.06486654 -0.031727632 0.011491211 0.061638814 -0.066916022 0.010681771 -0.091656209 -0.526960733 -0.341369952 -0.32696688 -0.055491789 -0.294505021 -0.068030159 -0.125585302
G000005 -0.167182843 -0.418506978 -0.021186945 -0.041535296 0.078737662 -0.062426019 -0.064966003 -0.000902969 0.078503528 -0.161358971 -0.23048201 -0.190395558 -0.053779427 -0.553924393 -0.100436552 -0.177060166 -0.065681294 -0.099648047 -0.34244776 -0.073177641 0.009727669 0.022045105 0.092838448 -0.289969696 -0.149298683 0.061737606 -0.018807821 -0.120963929 -0.14283445 -0.123669154 0.298092547 0.109025118 -0.118195954 -0.243664961 -0.120882697 -0.117541677 -0.666457789 -0.297718949 -0.45942487 -0.276409917 0.025492877 -0.51119902 -0.206979456 -0.028228822 -0.084050477 -0.105609477 -0.249593339 -0.306987666 -0.034511847 -0.171439221 0.111881435 -0.269018871 -0.101595967 0.111979614 -0.140016628 0.025913175 -0.057852599 -0.278475109 0.05349292 -0.33103089 -0.309918613 -0.681011456 -0.595900826 -0.180425036 -0.358833833 -0.15734971 0.029046225
G000006 0.021476373 -0.270741552 0.075481555 -0.165013469 0.033294059 0.035349199 -0.121762066 -0.007534695 -0.027217557 0.07861729 -0.12530681 -0.298060269 -0.18965482 -0.176206993 -0.050411362 -0.055566976 -0.209483917 -0.047321574 -0.151766761 -0.120046364 -0.062907451 -0.0512708 0.043832327 0.093485313 -0.088700268 -0.073118456 0.241016068 0.10520059 -0.009960153 0.111744864 0.250490324 0.041401968 -0.009643985 -0.124152025 0.027061082 0.048068598 -0.464047952 -0.143380155 -0.109966805 0.040696441 -0.426118322 -0.187227333 -0.202355294 -0.101020745 0.044976051 -0.089518744 -0.094106889 -0.059047868 -0.059269475 0.084793951 -0.088665875 0.103560824 0.093205918 0.046650801 -0.006894451 0.016309502 -0.060861078 0.086495673 -0.097240625 -0.16361639 -0.282897546 -0.287833907 -0.049398057 -0.258879929 -0.168409853 -0.120361864
G000007 0.178631515 -0.224951043 0.21012187 0.08876083 0.022884245 0.11910956 0.082411885 0.090656207 0.083037665 0.163245661 0.084221625 -0.026162843 -0.02609817 -0.153067495 -0.046154226 0.125837522 0.112424402 0.019904434 -0.135489455 -0.017281729 -0.028419709 -0.010540385 0.020170367 -0.050628609 -0.01296478 -0.055735649 0.215524528 0.076171794 0.038097988 0.187749743 0.308999995 0.020677416 -0.080633784 -0.13500987 0.018860334 -0.015017688 -0.534782228 -0.006734546 -0.352264806 -0.159563397 -0.026329932 -0.239668451 -0.168601384 -0.039469969 -0.021091084 0.009814036 -0.04972988 0.120560374 -0.103983903 -0.052701381 0.636769939 -0.141472065 -0.108410781 -0.020275534 -0.069303994 -0.045823706 0.117665863 -0.093942132 -0.050089588 -0.073855616 -0.170069021 -0.133847613 -0.210173579 0.105454371 -0.068214786 -0.187579244 0.040835755
G000008 -0.019844729 -0.121837435 0.083479043 -0.033968991 0.003466841 -0.020093634 -0.097217098 -0.104385012 -0.071828228 -0.049184029 0.014166829 -0.074263977 -0.174271916 -0.242412463 -0.320716361 -0.105954593 -0.086084272 -0.115744582 -0.080013074 -0.14063848 -0.080811619 -0.038709978 -0.078250433 -0.040746403 -0.013869461 -0.170653412 -0.126779834 0.128390628 -0.026555523 -0.105922544 0.05928234 0.248248502 0.053680578 0.005123111 -0.091146374 -0.018131142 -0.010742679 -0.583225482 -0.164022308 -0.403130325 -0.092662335 0.054905807 -0.293880583 -0.035648151 -0.181287126 0.03697414 0.011356045 0.021216092 -0.056581377 -0.141521849 -0.074258232 -0.035292552 -0.023476708 -0.001971719 -0.080155539 -0.021476767 -0.092127029 0.018891687 -0.150195896 -0.000794382 -0.193601877 -0.169099365 -0.315760506 -0.311950837 -0.185736899 -0.154704506 -0.175976991 -0.200818293
G000009 -0.000101355 -0.170884506 0.095214981 -0.088576465 -0.043788728 -0.005196526 -0.069248502 -0.093459014 -0.06366158 -0.079410389 -0.007744814 -0.094145207 -0.193946578 -0.170721352 -0.34496081 -0.177843566 -0.086946714 -0.01634073 -0.071119895 -0.171400898 -0.143982652 -0.130437747 -0.075341067 -0.071662805 -0.057313053 -0.097829302 -0.028123226 0.115151115 -0.009751692 -0.095669629 -0.116214992 0.453714851 0.081353182 0.056276986 -0.031043098 0.056895527 0.086222134 -0.591317825 -0.151488835 -0.360059593 -0.139334742 0.059954224 -0.270735867 -0.02019387 -0.080922803 -0.024279573 0.065493537 0.022000466 -0.021134603 -0.032848565 0.029001263 0.002052919 0.03347707 0.033601321 0.000591123 -0.027163268 -0.042560322 0.0371124 -0.05045841 0.05014469 -0.186899017 -0.168107134 -0.270007338 -0.313612487 -0.271993903 -0.136515441 -0.099267959 -0.134401481
G000010 0.03530397 -0.083753557 0.063070121 -0.100041901 0.02564635 -0.006608038 -0.013370766 -0.036584105 0.040824013 0.007565216 -0.027325976 -0.120315819 -0.126952321 -0.222193888 -0.247946141 -0.024286951 0.016995018 -0.100741843 -0.051205679 -0.133554814 -0.077071898 -0.092701937 -0.082831394 -0.05607941 0.0995019 -0.097791632 -0.067205573 0.182799495 -0.000546616 -0.136318686 -0.094761524 0.252416684 0.039714124 0.057596626 -0.101811629 -0.048951724 0.128065316 -0.430517948 -0.123384792 -0.084589662 -0.140459113 -0.002516335 -0.229922422 -0.096244679 -0.094036151 -0.082828309 -0.00494392 0.040692799 0.017376972 -0.05580356 0.013091424 -0.044243401 -0.116101128 0.024963345 -0.011048985 0.032426914 -0.049766133 0.094795484 -0.057376839 0.0167613 -0.110555311 -0.212408364 -0.280642383 -0.295110732 -0.209799517 -0.224915644 -0.094368954 -0.106759065
G000011 -0.064128211 -0.178966376 0.018769357 -0.168716204 0.045840841 -0.01102219 -0.100887326 -0.064562916 0.044069205 -0.042969864 0.02251941 -0.15824657 -0.21036463 -0.322984325 -0.099206027 -0.05585183 -0.165530454 -0.110992778 -0.246338855 -0.149768801 -0.143994774 -0.03703501 0.013402585 -0.099713005 -0.093412938 -0.110319258 0.172712667 0.00354864 -0.062227689 0.045332719 0.335336961 0.033606248 -0.007165284 -0.128935135 0.001117376 0.030284292 -0.560568347 -0.106243358 -0.370252761 -0.16651148 -0.032930344 -0.313766281 -0.12043255 -0.143206767 -0.099269426 -0.01635381 -0.07287927 -0.077720047 -0.162876428 -0.105733855 -0.024423949 -0.112415108 -0.121696622 -0.038356926 -0.081508425 0.00863202 -0.168873592 -0.212591314 -0.21502577 -0.193857376 -0.246720569 -0.103199078 -0.085931079 -0.291707969 -0.074178207
G000012 -0.105562766 -0.200499746 -0.07683668 -0.3432819 -0.068460494 -0.148265327 -0.210542055 -0.160824814 -0.07700165 -0.098292407 -0.046192485 -0.133993034 -0.245711111 -0.351139147 -0.318549781 -0.07082588 -0.054593525 -0.162553663 -0.072029527 -0.255989085 -0.095935954 -0.070386672 -0.01342843 -0.009569029 0.17114063 -0.236561448 -0.073194795 0.119445446 -0.017168604 -0.288242602 -0.120777997 0.38028337 0.017470698 0.121796352 -0.116672437 0.011990734 0.016781001 -0.593432676 -0.061627193 -0.611287084 -0.169445406 0.080496275 -0.297125929 -0.015034446 0.031507897 0.02041742 0.084581616 -0.001065441 0.039291036 -0.012095472 0.070156062 -0.076458521 -0.094352375 0.05250259 -0.043646701 0.000583891 0.032021776 -0.017863065 -0.069905526 -0.243639244 -0.279318619 -0.364823876 -0.537060228 -0.217967806 -0.287349179 -0.238754745 -0.226441016
G000013 -0.109215646 -0.167937134 -0.06286925 -0.190674218 -0.033670614 -0.045117383 -0.190434147 -0.11583002 0.000631324 -0.111274205 -0.173099833 -0.133788613 -0.299749099 -0.093325444 -0.071045103 -0.234812796 -0.156745945 -0.220767748 -0.087611723 -0.033711545 -0.090422213 -0.08754501 -0.051675794 -0.203648858 -0.111703691 -0.052038757 -0.006303028 -0.17365245 -0.096167001 0.277028028 0.032481644 -0.03572576 -0.133173962 -0.050836748 0.012853271 -0.379585372 -0.096854186 -0.08100517 -0.035529562 0.061013107 -0.28241637 -0.098881138 -0.157969601 -0.035796777 -0.067701063 0.079975896 -0.052192391 -0.021527928 -0.059290236 -0.013797572 -0.027632034 -0.030485721 -0.003848368 -0.100549444 -0.007594937 -0.0194864 -0.064972894 -0.091127133 -0.205807115 -0.164591341 -0.201554746 -0.24400558 -0.206355451 -0.122407254 -0.248805979 -0.134047097
G000014 0.019257833 -0.129968943 0.070209674 -0.130898353 0.024365494 0.055397215 -0.145754001 -0.057296353 -0.008268828 0.026057532 -0.006483373 -0.12217879 -0.165026003 -0.162673845 -0.272113402 -0.051353095 -0.025530254 -0.176478396 -0.079106298 -0.166292643 -0.084158836 -0.101439717 0.002345669 0.009365905 -0.069202385 -0.063868086 -0.038569946 0.138471431 0.061109163 -0.096400786 0.009141203 0.333230026 0.053175869 0.034104276 -0.11964109 0.007049055 0.091591535 -0.607479443 -0.032330766 -0.260858334 -0.104024057 0.011051063 -0.363246108 -0.088019576 -0.130925045 -0.032591023 0.016760679 -0.049829233 -0.036940537 -0.165184147 -0.030296353 -0.073581641 0.024221825 -0.043290265 -0.159944717 -0.047220229 -0.001964004 0.011110465 -0.102952798 0.007718291 -0.121278482 -0.171625948 -0.196998431 -0.290254463 -0.144040032 -0.23173337 -0.19777859 -0.225771745
G000015 0.039713051 -0.11989404 0.048010657 -0.128229914 -0.032997444 -0.078927175 -0.208820546 -0.1125429 -0.038641929 -0.030280442 -0.011116387 -0.127595885 -0.137417804 -0.090790686 -0.16319279 -0.036271596 -0.033407415 -0.127550714 -0.075685007 -0.195945582 -0.038021319 -0.045274643 -0.002899401 -0.066855662 -0.080089968 -0.183007725 -0.108644283 0.073033157 -0.042767577 -0.117470221 0.026657305 0.285447703 0.037435918 -0.033511391 -0.14914315 -0.012490247 0.011813591 -0.548626772 -0.319741868 -0.182132523 -0.093211738 -0.003764689 -0.417620223 -0.075972945 -0.111653967 -0.005231068 -0.022520195 -0.039712969 -0.080173262 -0.027658592 -0.028880895 -0.038921253 -0.09205904 -0.068524387 -0.044162227 -0.012482116 -0.032962845 0.075032423 -0.15783713 -0.134186296 -0.193269471 -0.246974044 -0.257897483 -0.276886078 -0.195486791 -0.232142227 -0.197842661 -0.128937675
G000016 -0.071932342 -0.157302851 -0.08075146 -0.153368694 -0.078969663 -0.096561933 -0.203659008 -0.165431635 -0.074582479 -0.041455855 -0.084166632 -0.137731686 -0.211522702 -0.272109925 -0.289376425 -0.096779504 -0.093281281 -0.171347612 -0.051298662 -0.204477779 -0.025988995 -0.071173609 -0.083215299 -0.083508778 0.138987862 -0.178415468 -0.074542389 0.053245661 -0.02687367 -0.166028034 -0.116916783 0.339724622 -0.004044578 -0.026274755 -0.218529186 -0.064013158 -0.625536365 -0.096592112 -0.404210895 -0.064624087 -0.019494773 -0.307909512 -0.145785585 -0.254473475 -0.088068785 -0.098183505 0.082427327 -0.054628131 -0.104335839 0.020371736 -0.001806972 -0.032842331 0.096226238 -0.026845637 -0.013436398 -0.14249287 0.075292085 -0.061972673 -0.086532314 -0.223850258 -0.323589461 -0.401661344 -0.294726581 -0.175750283 -0.171696474 -0.209984015 -0.26807237
G000017 -0.1372409 -0.05738431 -0.163570041 -0.059533918 0.008453758 -0.000432144 0.030287466 -0.106964859 -0.04454688 0.156376345 0.042676666 -0.161877357 -0.04436069 0.34611726 0.102374846 0.021143495 -0.171272409 -0.012638334 0.006809218 -0.67656643 -0.102344609 -0.503821086 -0.09007447 0.004257089 -0.332391155 -0.053280796 -0.158003352 -0.046302429 -0.032592915 0.029940986 -0.01884377 -0.219407279 0.016280375 -0.066477517 0.070737182 0.262928973 -0.036989011 -0.008749237 -0.095116058 0.018516888 -0.340842766 -0.419606745 -0.397899238 -0.246847971 -0.179755412
G000018 -0.034544771 -0.128982219 -0.01065133 -0.171628082 -0.008737719 -0.01262692 -0.166225485 -0.108784917 -0.013549688 -0.016512207 -0.039163064 -0.088453597 -0.182460153 -0.24857703 -0.135603456 -0.001033183 0.0199523 -0.098132759 -0.055440449 -0.195768142 -0.085256377 0.023510597 0.025977922 0.01442792 0.013150994 -0.071239762 -0.029824418 0.113254723 -0.028136185 -0.115527667 -0.009714439 0.327490901 0.015191238 -0.006531527 -0.198798016 -0.009590364 -0.049302769 -0.508476615 -0.050627519 -0.193958899 -0.16879523 0.058893731 -0.297349949 -0.145627511 -0.128768623 -0.072824314 0.039322619 -0.030967033 -0.037092927 -0.067668714 -0.010867198 -0.008055129 -0.007097475 0.046630372 -0.043297957 -0.032419116 -0.006384733 0.070927632 -0.106426202 -0.180734694 -0.243592251 -0.30668542 -0.330575239 -0.180611178 -0.223414423 -0.173800713 -0.162345656
G000019 0.01034549 -0.131309914 -0.024866741 -0.164043692 0.006709939 -0.059580856 -0.136595134 -0.094161789 -0.005575358 0.029384165 0.005079511 -0.058231023 -0.073870792 -0.019471837 -0.152372561 -0.04313034 -0.069843608 -0.189522079 -0.032783919 -0.174313903 0.022206954 0.008408359 0.023009776 -0.062287095 0.061768839 -0.195792819 0.023742353 -0.019226734 0.112563519 -0.176866154 0.048137654 0.347940084 -0.025474656 0.011702626 -0.161986315 -0.070563412 0.021084768 -0.401018049 -0.087387526 -0.312706621 -0.013386746 0.060093682 -0.2248438 -0.102514892 -0.18952816 -0.043233264 0.052346785 0.120952475 -0.017489015 -0.01542716 0.031339768 -0.040651365 -0.066386886 -0.047054947 -0.0599544 -0.0480246 -0.054291755 -0.099318406 -0.083075737 -0.087754828 -0.150182016 -0.182705635 -0.059520767 -0.147271993 -0.127850585 -0.185863454 -0.173192093 -0.172381866
G000020 -0.025718503 -0.228566285 0.072438588 -0.109995 0.035800355 -0.026104933 -0.150500259 -0.13293366 -0.063160527 -0.012627111 -0.012300431 -0.138515337 -0.099156128 -0.113625809 -0.358142504 -0.008237205 0.005585948 -0.072931827 -0.022999869 -0.159426395 -0.048523367 -0.088447526 -0.001007486 0.03388693 -0.026038467 -0.123511868 -0.056254022 0.138679485 0.008839608 -0.278353684 -0.227489599 0.023367667 0.051848294 0.040507979 -0.129687691 -0.014540836 0.044402966 -0.73065214 0.000487666 -0.426515135 -0.255197778 -0.039843761 -0.550744986 -0.125573053 -0.046421634 -0.002904366 0.022279916 -0.06754403 -0.154829091 -0.104266227 0.030708274 0.006897436 -0.154999768 0.077854374 -0.02463477 0.091845119 -0.064116812 -0.003409241 -0.06642342 -0.058570879 -0.191363928 -0.320286283 -0.510016073 -0.617634214 -0.299201244 -0.318224933 -0.167625735 -0.292226049

Total number of rows: 6465

Table truncated, full table size 4901 Kbytes.




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SOFT formatted family file(s) SOFTHelp
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Supplementary data files not provided

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