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Sample GSM77510 Query DataSets for GSM77510
Status Public on Apr 14, 2006
Title 1EP25
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 -0.044 6251 5961 2350 605 612 140 52 340 6066 5683 2191 245 253 56 52 340
G000001-2 -0.058 6470 6257 2305 685 692 153 52 340 6271 5922 1879 247 252 59 52 340
G000001-3 0.009 6840 6616 2578 748 752 164 52 340 6302 6042 2232 249 262 97 52 340
G000002-1 -0.167 15260 13256 6233 619 635 160 80 541 16685 13476 6569 249 261 85 80 541
G000002-2 -0.206 15694 15331 3719 650 664 188 52 340 17590 16625 3298 232 241 65 52 340
G000002-3 -0.146 17488 16769 4359 696 709 166 52 420 18823 17950 4183 241 253 77 52 420
G000003-1 -0.314 11111 10611 2932 511 528 132 52 415 13406 12876 3116 226 233 63 52 415
G000003-2 -0.245 10767 10298 2867 537 535 118 52 340 12347 11778 2573 220 224 51 52 340
G000003-3 -0.206 10822 10353 2803 573 585 141 52 340 12049 11350 3133 229 233 59 52 340
G000004-1 -0.028 14903 14384 3376 572 580 139 52 420 14846 14187 3757 233 242 68 52 420
G000004-2 0.035 13678 12474 2970 545 542 131 52 340 13054 12259 2899 232 239 71 52 340
G000004-3 -0.138 13018 12419 2648 502 512 149 52 420 13999 13645 3797 225 234 67 52 420
G000005-1 0.05 24744 24112 4932 513 520 123 52 420 23637 22203 5038 224 229 57 52 420
G000005-2 -0.009 23484 22286 5274 494 495 119 52 420 23345 21702 5533 219 226 81 52 420
G000005-3 -0.044 21543 21637 6907 502 509 119 52 420 21906 20620 6612 212 218 58 52 420
G000006-1 0.067 20524 19335 4809 489 507 135 52 420 19330 18591 5037 210 221 74 52 420
G000006-2 0.021 20168 18445 4731 497 501 136 52 420 19600 17985 5102 214 223 70 52 420
G000006-3 -0.004 20688 18685 5224 454 469 123 52 420 20500 18158 5590 213 222 74 52 420
G000007-1 0.001 10616 9800 4212 646 663 187 52 340 10216 9353 3730 254 252 60 52 340
G000007-2 0.048 12333 12129 2655 606 634 152 32 236 11601 10768 2818 257 263 72 32 236

Total number of rows: 19395

Table truncated, full table size 1613 Kbytes.




Supplementary data files not provided
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