NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM77511 Query DataSets for GSM77511
Status Public on Apr 14, 2006
Title 1EP26
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.126 5263 5034 1623 719 735 175 52 340 4437 4164 1458 272 280 77 52 340
G000001-2 0.083 5485 5322 1326 903 904 194 52 340 4614 4444 1124 288 311 126 52 340
G000001-3 -0.203 4156 4069 1192 912 931 213 52 340 4125 4091 1489 390 419 148 52 340
G000002-1 -0.179 15788 15131 3632 559 569 142 52 420 17488 16624 4520 250 262 98 52 420
G000002-2 -0.227 15541 14717 3268 559 567 153 52 420 17773 16259 4174 235 244 80 52 420
G000002-3 -0.343 13206 12458 3405 607 609 136 52 420 16225 15294 3785 248 269 121 52 420
G000003-1 -0.218 8291 8120 2616 542 552 134 52 340 9261 9136 2672 246 250 62 52 340
G000003-2 -0.42 8251 7733 2543 528 527 122 52 340 10564 9911 2780 232 239 58 52 340
G000003-3 -0.534 7334 6779 2063 522 530 125 52 340 10110 9222 2745 245 248 67 52 340
G000004-1 -0.308 13185 12588 3178 519 529 150 52 420 15919 15532 3611 244 243 59 52 420
G000004-2 -0.306 13065 12702 2180 517 524 137 52 420 15750 15229 2774 236 242 65 52 420
G000004-3 -0.434 12505 12067 2697 472 479 131 52 420 16480 15676 3610 222 227 60 52 420
G000005-1 -0.299 20633 21859 5088 495 513 155 52 340 25018 25942 5595 238 251 151 52 340
G000005-2 -0.277 22869 22533 4996 493 518 191 52 340 27357 27128 5642 236 251 139 52 340
G000005-3 -0.305 22332 20409 6724 497 509 142 52 420 27206 25455 6754 226 240 103 52 420
G000006-1 -0.131 16960 16307 3198 479 485 122 52 420 18262 17007 4482 214 217 62 52 420
G000006-2 -0.166 16073 16101 3011 479 484 124 52 420 17706 17304 2975 215 219 63 52 420
G000006-3 -0.184 16673 16385 2792 476 483 127 52 340 18609 17219 3589 204 207 58 52 340
G000007-1 0.009 10417 9405 3167 636 646 134 52 340 9983 9796 3384 263 268 67 52 340
G000007-2 -0.133 10573 9131 3526 621 629 138 52 340 11173 9967 3812 257 263 68 52 340

Total number of rows: 19395

Table truncated, full table size 1602 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap