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Sample GSM77520 Query DataSets for GSM77520
Status Public on Apr 14, 2006
Title 2EP1
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.103 3332 3206 700 489 498 166 32 236 2876 2738 675 229 252 168 32 236
G000001-2 0.185 3386 4127 2312 492 493 120 32 236 2786 2782 542 240 242 78 32 236
G000001-3 0.276 3453 3470 1688 498 502 122 52 420 2691 2473 998 250 254 63 52 420
G000002-1 -0.15 13097 12718 2955 458 473 122 52 420 14255 13961 2405 234 241 56 52 420
G000002-2 -0.139 13433 13279 2577 466 476 114 52 340 14505 14478 2156 229 233 53 52 340
G000002-3 -0.148 12297 11925 2672 459 468 136 52 420 13340 12394 3255 226 231 56 52 420
G000003-1 -0.128 8165 7578 1983 448 452 112 52 340 8648 8217 2123 216 227 86 52 340
G000003-2 -0.185 7400 6916 2216 456 457 114 52 340 8108 7374 2441 213 215 50 52 340
G000003-3 -0.213 8050 7599 2298 433 435 111 52 340 9036 8270 2651 209 216 56 52 340
G000004-1 -0.084 15120 14031 3245 429 436 113 52 340 15794 14957 2916 219 225 70 52 340
G000004-2 -0.132 14948 14258 3879 411 420 118 52 420 16138 15719 3135 208 213 51 52 420
G000004-3 -0.125 16230 15906 3013 408 427 120 52 420 17462 17436 2764 212 220 58 52 420
G000005-1 -0.013 19577 17636 4671 452 457 122 52 340 19535 17569 4935 236 247 87 52 340
G000005-2 -0.018 19510 18167 5208 443 458 146 52 420 19539 18534 4704 228 253 153 52 420
G000005-3 -0.005 19276 18218 5370 427 434 98 52 420 19133 17653 5433 225 227 48 52 420
G000006-1 -0.104 12651 12051 2774 446 459 130 52 420 13334 12563 3024 220 232 91 52 420
G000006-2 -0.119 12323 11812 3512 454 511 552 52 420 13112 12687 3306 226 287 270 52 420
G000006-3 -0.239 12394 11750 3695 450 502 551 52 420 14314 12339 3857 222 258 205 52 420
G000007-1 -0.045 8031 7857 1682 485 496 125 52 340 8023 7806 1414 238 242 58 52 340
G000007-2 -0.01 8660 8314 1780 491 505 136 52 420 8456 8083 2044 233 239 64 52 420

Total number of rows: 19395

Table truncated, full table size 1609 Kbytes.




Supplementary data files not provided
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