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Sample GSM77522 Query DataSets for GSM77522
Status Public on Apr 14, 2006
Title 2EP3
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 -0.051 2979 2738 1113 422 434 114 52 340 2856 2456 1034 207 211 52 52 340
G000001-2 -0.078 2612 2438 912 403 410 109 52 340 2547 2303 917 215 220 49 52 340
G000001-3 -0.258 2652 2738 647 392 402 117 32 236 2909 2767 594 206 212 64 32 236
G000002-1 -0.207 12816 12250 3143 382 385 93 52 340 14540 13039 3383 190 193 47 52 340
G000002-2 -0.213 11983 11528 2693 370 378 97 52 420 13651 12935 3254 186 189 41 52 420
G000002-3 -0.371 11580 10771 2965 347 360 89 52 340 14713 13773 3533 190 194 46 52 340
G000003-1 -0.168 7603 7468 2322 403 413 104 52 340 8283 8158 2405 194 199 48 52 340
G000003-2 -0.167 7238 7016 2400 387 395 100 52 340 7877 7748 2637 184 191 49 52 340
G000003-3 -0.356 5483 4948 2004 390 407 132 52 420 6742 6301 2362 223 273 186 52 420
G000004-1 -0.064 17987 16860 4090 353 903 4417 52 420 18602 17429 4808 171 883 5267 52 420
G000004-2 -0.456 13752 12664 3340 339 349 100 52 420 18579 17953 3478 175 179 43 52 420
G000004-3 -0.204 14631 13669 3681 361 377 108 52 340 16613 16315 2918 179 185 46 52 340
G000005-1 0.102 18758 16994 4897 351 357 104 52 420 17343 15690 4581 187 190 48 52 420
G000005-2 -0.091 16807 15232 4308 352 354 91 52 340 17708 16343 4736 182 188 51 52 340
G000005-3 -0.026 16481 15101 5892 368 398 296 52 420 16585 15263 4967 181 189 63 52 420
G000006-1 -0.15 12772 12453 3498 335 361 143 52 420 13981 13115 3664 177 185 53 52 420
G000006-2 -0.123 12562 11654 3521 338 345 115 52 420 13485 12475 3740 175 181 49 52 420
G000006-3 -0.376 11044 10466 3381 338 347 116 52 420 14065 13429 4515 176 182 52 52 420
G000007-1 0.022 9125 8431 2622 456 479 233 52 340 8759 8405 2419 220 221 52 52 340
G000007-2 -0.057 8931 8625 2419 465 475 121 52 340 9020 8665 2215 210 214 54 52 340

Total number of rows: 19395

Table truncated, full table size 1609 Kbytes.




Supplementary data files not provided
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