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Sample GSM77535 Query DataSets for GSM77535
Status Public on Apr 14, 2006
Title 2EP16
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.125 1947 2180 1303 489 509 201 52 420 1718 1802 1047 381 399 123 52 420
G000001-2 0.238 2125 2261 1268 522 528 167 52 420 1760 1936 1543 401 414 146 52 420
G000001-3 0.378 2043 2223 1118 541 542 150 52 420 1567 1855 1065 411 426 127 52 420
G000002-1 -0.018 13963 14317 4689 459 521 292 52 420 14054 13822 4867 376 438 445 52 420
G000002-2 -0.002 16636 15748 4543 467 528 337 52 414 16552 16108 3252 360 428 437 52 414
G000002-3 0.1 16562 15703 5145 461 515 338 52 420 15402 14255 5385 376 441 417 52 420
G000003-1 468 496 199 474 489 166 120 774 386 407 196 356 391 277 120 774
G000003-2 -0.272 537 637 407 484 532 307 52 414 422 581 564 358 401 311 52 414
G000003-3 486 488 148 503 540 290 120 780 375 391 147 367 418 320 120 780
G000004-1 0.127 15406 15233 4537 422 455 245 52 420 14033 13621 5224 308 330 146 52 420
G000004-2 -0.1 11933 12747 3829 458 486 178 52 340 12642 13201 3507 340 359 157 52 340
G000004-3 -0.001 11935 11507 4309 467 491 178 52 414 11825 12869 4719 353 365 134 52 414
G000005-1 -0.088 19856 19120 3937 388 416 247 52 420 20998 21266 3642 303 324 144 52 420
G000005-2 -0.111 16704 16807 4119 397 403 136 52 420 17906 17610 5091 299 319 142 52 420
G000005-3 -0.008 19678 19861 3820 415 431 183 52 420 19677 19623 5259 312 334 157 52 420
G000006-1 -0.136 11955 12534 5329 370 400 244 120 675 13036 12812 5710 309 326 132 120 675
G000006-2 -0.004 14414 14491 4422 372 410 292 120 643 14399 14750 4630 317 333 125 120 643
G000006-3 -0.066 14943 14837 5880 386 429 320 120 697 15557 14759 6829 321 345 194 120 697
G000007-1 0.189 13042 12791 2688 497 697 2894 52 414 11395 11314 2698 387 620 2768 52 414
G000007-2 0.103 12867 12842 3315 484 528 271 52 420 11895 11312 3145 362 429 777 52 420

Total number of rows: 19395

Table truncated, full table size 1631 Kbytes.




Supplementary data files not provided
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