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Sample GSM77536 Query DataSets for GSM77536
Status Public on Apr 14, 2006
Title 2EP17
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 -0.001 3301 3367 910 337 351 121 52 340 3306 3257 906 339 347 102 52 340
G000001-2 0.26 2817 3410 3173 394 1397 4906 80 541 2369 2812 1872 346 626 1798 80 541
G000001-3 0.26 3180 2928 1665 495 1941 5307 80 621 2606 2408 1493 364 767 2440 80 621
G000002-1 0.239 12009 9804 5163 372 687 2729 80 534 10148 7829 4963 289 392 977 80 534
G000002-2 0.15 9232 8586 2614 347 369 158 52 420 8303 7862 2128 295 304 97 52 420
G000002-3 0.221 9079 8921 2883 350 371 129 52 340 7792 8192 2586 302 308 98 52 340
G000003-1 0.238 7051 6554 1604 350 357 122 52 340 5975 5724 1282 294 303 94 52 340
G000003-2 0.205 6152 6240 1757 339 346 114 52 340 5343 5461 1534 300 305 96 52 340
G000003-3 0.14 5773 5403 1475 358 370 124 52 340 5273 5214 1112 358 372 173 52 340
G000004-1 0.155 7970 7472 2789 288 302 130 52 340 7170 6745 2295 270 283 109 52 340
G000004-2 0.112 8152 7877 1955 294 305 119 52 340 7548 7048 1759 278 296 172 52 340
G000004-3 0.188 7751 7307 2579 313 334 147 52 340 6847 6483 2050 318 356 248 52 340
G000005-1 0.324 10336 9791 2564 295 299 99 52 340 8314 7791 1988 292 299 103 52 340
G000005-2 0.458 8568 8951 2253 326 330 116 52 334 6350 6779 1695 351 382 160 52 334
G000005-3 0.226 8298 8559 2578 319 331 140 52 340 7138 6851 2059 316 344 205 52 340
G000006-1 0.197 12444 12104 3677 292 312 132 120 666 10869 10529 3091 270 278 93 120 666
G000006-2 0.256 11876 11649 2158 310 328 137 120 637 9986 9714 2201 303 322 147 120 637
G000006-3 0.234 12392 12090 2125 324 334 123 120 689 10580 10262 2190 322 342 169 120 689
G000007-1 0.069 6397 6253 1676 358 433 545 52 340 6102 5989 1473 346 359 151 52 340
G000007-2 0.264 7548 7179 1471 347 362 124 52 340 6335 6197 1701 337 343 105 52 340

Total number of rows: 19395

Table truncated, full table size 1607 Kbytes.




Supplementary data files not provided
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