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Sample GSM77537 Query DataSets for GSM77537
Status Public on Apr 14, 2006
Title 2EP18
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 -0.036 3464 3354 1888 534 2447 7135 80 492 3561 3400 1728 558 998 2282 80 492
G000001-2 -0.027 3592 4227 5039 542 1865 5135 80 532 3612 3562 2158 504 848 1716 80 532
G000001-3 0.374 2813 4587 7174 599 2835 7187 120 761 2182 2900 3753 473 1102 2645 120 761
G000002-1 -0.025 10339 10262 1443 326 347 222 52 420 10501 10377 1508 316 331 111 52 420
G000002-2 -0.043 10280 9628 2186 338 339 114 52 420 10552 10286 2064 306 316 98 52 420
G000002-3 -0.144 9349 9296 1972 340 344 117 52 420 10263 10202 1800 309 320 98 52 420
G000003-1 -0.139 6631 6500 1415 300 310 112 52 340 7291 7165 1391 322 333 109 52 340
G000003-2 -0.151 5713 5535 1541 300 307 118 52 340 6800 6235 1749 788 793 492 52 340
G000003-3 -0.038 6403 6256 1086 305 372 859 52 340 6932 6764 1370 671 691 307 52 340
G000004-1 -0.068 8780 7933 3033 275 283 117 52 340 9258 8660 3147 343 379 164 52 340
G000004-2 -0.03 9260 8856 2142 280 286 103 52 340 9485 9325 2744 316 325 111 52 340
G000004-3 -0.046 8750 8695 1381 284 334 380 32 236 9201 8806 1478 459 498 422 32 236
G000005-1 0.031 10438 10644 2685 308 316 106 52 340 10202 9972 2918 287 303 100 52 340
G000005-2 0.053 11078 10793 1819 308 313 124 52 340 10709 10333 1896 331 341 115 52 340
G000005-3 0.105 9477 9831 2473 290 310 117 52 340 8905 9176 1516 362 373 126 52 340
G000006-1 -0.096 14173 13751 4518 303 313 111 120 664 15181 14924 4633 358 365 107 120 664
G000006-2 -0.067 15588 14550 4123 306 310 105 120 636 16360 15425 4152 357 363 105 120 636
G000006-3 0.036 14977 14217 3713 294 312 116 120 688 14678 14223 3517 360 368 108 120 688
G000007-1 0.098 6570 6196 4541 460 1988 5830 80 535 6767 6460 3643 1059 1493 2392 80 535
G000007-2 0.104 7212 7278 5402 510 2185 5780 80 533 7256 6844 4425 1018 1456 2077 80 533

Total number of rows: 19395

Table truncated, full table size 1619 Kbytes.




Supplementary data files not provided
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