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Sample GSM77540 Query DataSets for GSM77540
Status Public on Apr 14, 2006
Title 2EP21
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 -0.032 3398 3293 1324 426 1240 4586 52 340 3310 3315 1218 271 538 1880 52 340
G000001-2 -0.29 3136 2959 1069 481 1890 5295 52 420 3555 3294 1356 309 746 2612 52 420
G000001-3 -0.141 2926 3026 2301 462 1077 3418 80 546 3017 2932 1991 300 441 925 80 546
G000002-1 -0.225 10661 9980 3723 326 337 114 52 420 12348 11734 3625 270 282 91 52 420
G000002-2 -0.234 10121 9636 2644 349 368 121 52 340 11770 11408 3350 281 286 90 52 340
G000002-3 -0.59 8642 8277 2281 396 404 128 52 340 12713 12399 2721 303 310 93 52 340
G000003-1 -0.151 6748 6061 1994 294 303 105 52 340 7457 6827 2379 291 304 90 52 340
G000003-2 -0.131 6900 6237 2175 272 292 129 52 340 7569 7149 2379 309 316 99 52 340
G000003-3 -0.286 6088 6238 1929 297 301 106 52 340 7377 7266 2223 318 328 95 52 340
G000004-1 -0.157 9679 8931 2409 253 319 763 52 340 10885 9764 3167 373 391 204 52 340
G000004-2 -0.296 7843 7152 2110 263 319 758 52 340 9748 9271 2883 444 468 196 52 340
G000004-3 -0.284 8796 8474 2369 265 276 101 52 340 10857 10349 3323 472 477 121 52 340
G000005-1 -0.058 11901 11333 4191 277 281 101 52 420 12428 11587 4021 325 332 98 52 420
G000005-2 -0.111 10600 10283 2143 266 268 92 52 340 11593 11086 3091 436 449 143 52 340
G000005-3 -0.025 9431 9695 2276 258 276 100 52 340 9873 10551 2589 542 549 131 52 340
G000006-1 -0.204 13946 13740 4733 284 297 107 120 667 15998 15640 5164 258 269 110 120 667
G000006-2 -0.193 14462 13860 4640 284 291 103 120 645 16469 15802 5165 260 271 105 120 645
G000006-3 -0.212 14044 13361 3070 266 277 102 120 589 16232 15257 3823 273 281 93 120 589
G000007-1 -0.024 7875 7512 7162 413 710 2702 80 540 7875 6464 4731 288 329 442 80 540
G000007-2 -0.146 7482 7241 2229 366 614 3120 52 340 8160 8042 2180 288 327 516 52 340

Total number of rows: 19395

Table truncated, full table size 1606 Kbytes.




Supplementary data files not provided
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