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Sample GSM77549 Query DataSets for GSM77549
Status Public on Apr 14, 2006
Title 2EP30
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 0.082 4147 3898 997 383 513 780 52 420 3816 3514 1127 259 373 823 52 420
G000001-2 0.161 4841 4625 2109 383 1041 3273 80 540 4226 3930 2113 238 481 1491 80 540
G000001-3 -0.349 3583 4261 5212 355 906 3735 80 548 4355 4009 2073 243 385 1249 80 548
G000002-1 -0.312 9750 9416 1420 296 305 114 52 414 11942 11386 2235 205 214 66 52 414
G000002-2 -0.146 9912 9419 2190 310 319 128 52 420 10833 10089 2262 210 213 59 52 420
G000002-3 -0.196 9624 9440 1712 322 338 116 52 420 10882 10437 1760 225 230 81 52 420
G000003-1 -0.203 5955 5050 2496 315 336 152 80 548 6699 5886 2979 208 215 68 80 548
G000003-2 -0.072 6671 6620 1326 300 316 115 52 420 6905 6713 1490 208 213 58 52 420
G000003-3 -0.12 6619 6410 1271 309 327 118 52 420 7067 6905 1021 212 221 64 52 420
G000004-1 -0.087 9210 8782 1651 276 287 95 52 420 9698 9520 1346 208 208 54 52 420
G000004-2 0.007 9428 9069 2226 292 300 97 52 420 9289 8842 2196 196 203 55 52 420
G000004-3 -0.018 9475 9183 1862 311 321 133 52 420 9481 9372 1966 203 205 57 52 420
G000005-1 -0.176 10812 10352 2754 299 315 112 52 414 12083 11545 3259 206 211 57 52 414
G000005-2 -0.294 9294 9154 1460 302 312 108 52 414 11244 11157 1575 217 219 56 52 414
G000005-3 -0.166 9240 9027 2415 307 323 110 52 414 10235 9742 2643 216 218 59 52 414
G000006-1 -0.164 12193 11929 2210 330 342 111 52 420 13512 13395 2264 222 228 64 52 420
G000006-2 -0.255 11044 10823 2255 342 353 105 52 420 12993 12037 2808 226 233 67 52 420
G000006-3 -0.342 10313 10132 2401 340 344 112 52 400 12881 12981 3053 236 247 81 52 400
G000007-1 0.063 13012 12447 2522 510 1626 3636 52 416 12234 12271 2244 265 547 1286 52 416
G000007-2 1.321 11288 11701 10227 429 1039 2850 208 928 4594 6884 7180 249 410 1002 208 928

Total number of rows: 19395

Table truncated, full table size 1595 Kbytes.




Supplementary data files not provided
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