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Sample GSM77553 Query DataSets for GSM77553
Status Public on Apr 14, 2006
Title 2EP34
Sample type genomic
 
Channel 1
Source name Pooled reference DNA from either 4 healthy males or females of the opposite sex compared to the sample.
Organism Homo sapiens
Characteristics 635nm
Extracted molecule genomic DNA
Label Cy5
 
Channel 2
Source name Isolated tumor DNA, derived from ependymal tumors.
Organism Homo sapiens
Characteristics 532nm
Extracted molecule genomic DNA
Label Cy3
 
 
Description Comparison of normal versus tumor DNA (ependymoma). Whole-genome screening of DNA-copy number changes by array-based or matrix comparative genomic hybridization (matrix-CGH).
Data processing Genepix result files
 
Submission date Oct 11, 2005
Last update date Apr 13, 2006
Contact name Frank Mendrzyk
E-mail(s) f.mendrzyk@dkfz.de
Phone 49-6221-424676
Organization name German Cancer Research Center (DKFZ)
Street address
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL2920
Series (1)
GSE3435 Human ependymomas.

Data table header descriptions
ID_REF
VALUE Raw log ratio (Cy5/Cy3).
CH1_RAW Raw median signal intensity in Cy5-channel (635nm).
CH1_MEAN Raw mean signal intensity in Cy5-channel (635nm).
CH1_SD Signal intensity standard deviation in Cy5-channel (635nm).
CH1_BKD_RAW Raw median background intensity in Cy5-channel (635nm).
CH1_BKD_MEAN Raw mean background intensity in Cy5-channel (635nm).
CH1_BKD_SD Background intensity standard deviation in Cy5-channel (635nm).
CH1_AREA Signal area in Cy5-channel (635nm).
CH1_BKD_AREA Background area in Cy5-channel (635nm).
CH2_RAW Raw median signal intensity in Cy3-channel (532nm).
CH2_MEAN Raw mean signal intensity in Cy3-channel (532nm).
CH2_SD Signal intensity standard deviation in Cy3-channel (532nm).
CH2_BKD_RAW Raw median background intensity in Cy3-channel (532nm).
CH2_BKD_MEAN Raw mean background intensity in Cy3-channel (532nm).
CH2_BKD_SD Background intensity standard deviation in Cy3-channel (532nm).
CH2_AREA Signal area in Cy3-channel (532nm).
CH2_BKD_AREA Background area in Cy3-channel (532nm).

Data table
ID_REF VALUE CH1_RAW CH1_MEAN CH1_SD CH1_BKD_RAW CH1_BKD_MEAN CH1_BKD_SD CH1_AREA CH1_BKD_AREA CH2_RAW CH2_MEAN CH2_SD CH2_BKD_RAW CH2_BKD_MEAN CH2_BKD_SD CH2_AREA CH2_BKD_AREA
G000001-1 -0.735 1394 1515 684 513 528 161 52 420 1805 1854 839 339 351 117 52 420
G000001-2 -0.395 1555 1604 620 515 530 164 52 420 1707 1774 904 339 356 137 52 420
G000001-3 -0.342 1481 1497 545 479 489 139 52 340 1614 1688 856 344 343 102 52 340
G000002-1 0.078 13368 13148 1973 412 440 174 52 420 12574 12291 2176 296 321 142 52 420
G000002-2 -0.308 10376 10743 1547 417 441 195 52 340 12616 13138 1884 289 313 135 52 340
G000002-3 -0.105 10863 11114 2044 411 431 199 52 420 11527 11132 3695 289 302 147 52 420
G000003-1 0.217 9413 9294 1505 403 417 175 52 340 8078 8383 1459 328 359 241 52 340
G000003-2 -0.032 7977 7847 1694 433 466 176 52 340 8022 8033 2013 307 320 99 52 340
G000003-3 -0.102 7341 7466 1429 395 407 127 52 340 7725 7574 2235 269 282 97 52 340
G000004-1 0.246 12355 12503 2270 356 383 163 52 340 10398 10879 2283 281 302 136 52 340
G000004-2 -0.083 10612 10460 2533 357 358 119 52 340 11132 11375 2668 273 286 109 52 340
G000004-3 -0.033 9599 9365 2126 358 371 121 52 340 9714 9054 3143 262 266 91 52 340
G000005-1 0.176 15710 16578 2950 370 410 253 52 340 13863 14064 2679 282 310 223 52 340
G000005-2 0.258 15008 15688 3677 364 521 1383 52 420 12541 13146 3518 299 397 1010 52 420
G000005-3 -0.051 13246 13868 3962 380 449 390 52 340 13623 14097 3867 292 336 505 52 340
G000006-1 -0.021 13707 12840 5460 294 312 133 120 704 13860 13254 6036 251 264 103 120 704
G000006-2 0.207 13201 13656 4089 291 303 122 80 572 11437 11573 4002 256 282 193 80 572
G000006-3 -0.031 14031 13384 5757 287 301 134 120 716 14308 13808 6040 266 299 219 120 716
G000007-1 0.284 9904 9993 1828 479 490 151 52 420 8081 8167 2054 338 345 109 52 420
G000007-2 0.13 9586 9053 3646 462 483 172 80 560 8678 8065 3745 341 350 116 80 560

Total number of rows: 19395

Table truncated, full table size 1608 Kbytes.




Supplementary data files not provided
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