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Sample GSM78 Query DataSets for GSM78
Status Public on Nov 10, 2001
Title 7T-SILKS
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name Silks before emergence
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 13, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 130 8318 8559 3221 62 79 189 5153 5460 1851 77 84 89 0.946 120 786 0 0.1981073 1.578
707002E03.y1 120 9031 8936 2637 65 84 205 4400 4383 1156 80 88 95 0.946 120 664 0 0.3142893 2.062
707002G11.y1 130 1415 1429 530 70 71 15 1067 1101 397 87 89 22 0.939 120 709 0 0.1271053 1.340
707003H06.x3 140 5974 6069 2334 72 74 15 4814 4900 1865 92 94 24 0.956 156 811 0 0.0958663 1.247
707004B03.y1 130 1402 1522 446 76 83 63 1480 1580 452 95 99 32 0.937 120 690 0 -0.0114413 0.974
707004G10.x1 140 20494 20175 7817 76 82 57 11335 10874 4118 95 98 30 0.955 156 843 0 0.2706793 1.865
707001A04.x1 130 6276 6289 2062 77 80 22 9405 9448 3316 97 99 21 0.956 120 707 0 -0.1778323 0.664
707002E04.y1 130 17748 16565 4639 75 79 23 12577 11771 3061 95 96 18 0.96 120 722 0 0.1498353 1.412
707003C01.x3 140 25571 26215 11641 74 78 32 1953 1921 617 94 95 20 0.906 156 810 0 1.1555793 14.308
707003H07.x2 140 2569 2521 881 74 77 23 2738 2826 1077 93 95 19 0.944 156 790 0 -0.0481773 0.895
707004H03.x2 140 14246 14048 5546 74 75 14 11421 11217 4220 91 92 15 0.96 156 811 0 0.0989903 1.256
707004A11.x2 130 7483 7483 2798 74 77 23 5662 5548 1973 91 93 16 0.952 120 690 0 0.1329003 1.358
707001C09.x1 130 2026 2234 640 71 104 240 1744 1863 525 89 109 170 0.953 120 724 0 0.0860043 1.219
707002B05.y1 140 3364 3396 1280 71 99 221 3426 3415 1261 91 108 156 0.947 156 862 0 0.0000003 1.000
707003C02.x2 130 5972 6219 2583 72 75 41 11717 12451 5309 93 94 16 0.936 120 689 0 -0.3036443 0.497
707003H08.x4 140 2828 2814 1036 74 80 52 3140 3143 1237 96 99 30 0.951 156 826 0 -0.0462403 0.899
707004G04.x2 130 4336 4538 1454 75 96 219 4584 4799 1489 95 111 138 0.956 120 692 0 -0.0227343 0.949
707004D11.y1 130 5012 5177 1636 76 111 300 3712 3733 1090 93 113 146 0.952 120 743 0 0.1464383 1.401
707001E11.x1 130 12837 13322 4757 75 96 222 13877 14438 5031 94 102 65 0.958 120 742 0 -0.0343283 0.924
707002F05.y1 130 11465 11764 3799 72 93 244 7658 8076 2645 94 98 40 0.958 120 791 0 0.1658383 1.465

Total number of rows: 5760

Table truncated, full table size 544 Kbytes.




Supplementary data files not provided
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