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GEO help: Mouse over screen elements for information. |
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Status |
Public on Dec 01, 2012 |
Title |
Human Liver |
Sample type |
SRA |
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Source name |
Wildtype human liver
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Organism |
Homo sapiens |
Characteristics |
genotype/variation: wildtype tissue: brain
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Treatment protocol |
N/A
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Growth protocol |
N/A
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Extracted molecule |
polyA RNA |
Extraction protocol |
Illumina FastTrack mRNA-Seq library construction
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina Genome Analyzer |
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Description |
RNA-Seq performed on polyadenylated RNA
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Data processing |
The sequence reads were aligned to human (hg18) and mouse (mm8) genomic sequence using Bowtie (Langmead et al., Genome Biol. 2009 10).
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Submission date |
Aug 17, 2011 |
Last update date |
May 15, 2019 |
Contact name |
Qun Pan |
E-mail(s) |
qun.pan@utoronto.ca
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Organization name |
University of Toronto
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Street address |
160 College St.
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City |
Toronto |
ZIP/Postal code |
M5S 3E1 |
Country |
Canada |
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Platform ID |
GPL9052 |
Series (1) |
GSE31454 |
Species-specific splicing differences are primarily governed by changes in cis-acting sequences |
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Relations |
SRA |
SRX092365 |
BioSample |
SAMN00710335 |
Supplementary file |
Size |
Download |
File type/resource |
GSM781695_Human_Liver_1_1_sequence.txt.reads.sorted.counted.fa.bowtie.gz |
268.9 Mb |
(ftp)(http) |
BOWTIE |
GSM781695_Human_Liver_1_2_sequence.txt.reads.sorted.counted.fa.bowtie.gz |
294.0 Mb |
(ftp)(http) |
BOWTIE |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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