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Sample GSM781695 Query DataSets for GSM781695
Status Public on Dec 01, 2012
Title Human Liver
Sample type SRA
 
Source name Wildtype human liver
Organism Homo sapiens
Characteristics genotype/variation: wildtype
tissue: brain
Treatment protocol N/A
Growth protocol N/A
Extracted molecule polyA RNA
Extraction protocol Illumina FastTrack mRNA-Seq library construction
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Description RNA-Seq performed on polyadenylated RNA
Data processing The sequence reads were aligned to human (hg18) and mouse (mm8) genomic sequence using Bowtie (Langmead et al., Genome Biol. 2009 10).
 
Submission date Aug 17, 2011
Last update date May 15, 2019
Contact name Qun Pan
E-mail(s) qun.pan@utoronto.ca
Organization name University of Toronto
Street address 160 College St.
City Toronto
ZIP/Postal code M5S 3E1
Country Canada
 
Platform ID GPL9052
Series (1)
GSE31454 Species-specific splicing differences are primarily governed by changes in cis-acting sequences
Relations
SRA SRX092365
BioSample SAMN00710335

Supplementary file Size Download File type/resource
GSM781695_Human_Liver_1_1_sequence.txt.reads.sorted.counted.fa.bowtie.gz 268.9 Mb (ftp)(http) BOWTIE
GSM781695_Human_Liver_1_2_sequence.txt.reads.sorted.counted.fa.bowtie.gz 294.0 Mb (ftp)(http) BOWTIE
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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