|
Status |
Public on Sep 01, 2011 |
Title |
Colon_R43_1962 |
Sample type |
RNA |
|
|
Source name |
Colon adenocarcinoma
|
Organism |
Homo sapiens |
Characteristics |
age: 74 gender: female ethnicity: caucasian tumor location: right colon tnm-stage: III histology: mucinous adenocarcinoma number of lymphnodes resected: 18 adjuvant chemotherapy: yes relapse free survival time: 40.60 month recurrence: yes death: no
|
Biomaterial provider |
Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
|
Label |
Biotin
|
Label protocol |
Standard Affymetrix protocols.
|
|
|
Hybridization protocol |
Standard Affymetrix protocols.
|
Scan protocol |
Standard Affymetrix protocols.
|
Data processing |
The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
|
|
|
Submission date |
Aug 23, 2011 |
Last update date |
Aug 28, 2018 |
Contact name |
Morten Thorsteinsson |
E-mail(s) |
moth@regionsjaelland.dk
|
Phone |
+45 61276425
|
Fax |
+45 47323009
|
Organization name |
Roskilde Hospital, University of Copenhagen
|
Department |
Department of Surgery
|
Street address |
Koegevej 7-13
|
City |
Roskilde |
ZIP/Postal code |
4000 |
Country |
Denmark |
|
|
Platform ID |
GPL570 |
Series (1) |
GSE31595 |
Gene Expression Profiles in Stage II and III Colon Cancer. Application of a 128-gene signature |
|
Relations |
Reanalyzed by |
GSE119087 |