|
| Status |
Public on Sep 01, 2011 |
| Title |
Colon_R55_1970 |
| Sample type |
RNA |
| |
|
| Source name |
Colon adenocarcinoma
|
| Organism |
Homo sapiens |
| Characteristics |
age: 88
gender: male
ethnicity: caucasian
tumor location: right colon
tnm-stage: III
histology: adenocarcinoma
grade: moderately diff.
number of lymphnodes resected: 12
adjuvant chemotherapy: no
relapse free survival time: 11.67 month
recurrence: yes
death: yes
|
| Biomaterial provider |
Roskilde Hospital and Department of Cellular and Molecular Medicine, University of Copenhagen
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using mirVana® miRNA isolation Kit (Ambion, Applied Biosystems, USA) according to the manufacturers protocol.
|
| Label |
Biotin
|
| Label protocol |
Standard Affymetrix protocols.
|
| |
|
| Hybridization protocol |
Standard Affymetrix protocols.
|
| Scan protocol |
Standard Affymetrix protocols.
|
| Data processing |
The processing and analysis of expression data were performed using the statistical software R and Bioconductor. For all Affymetrix CEL files the background were corrected and the expression were normalized using robust multiarray average (RMA).
|
| |
|
| Submission date |
Aug 23, 2011 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Morten Thorsteinsson |
| E-mail(s) |
moth@regionsjaelland.dk
|
| Phone |
+45 61276425
|
| Fax |
+45 47323009
|
| Organization name |
Roskilde Hospital, University of Copenhagen
|
| Department |
Department of Surgery
|
| Street address |
Koegevej 7-13
|
| City |
Roskilde |
| ZIP/Postal code |
4000 |
| Country |
Denmark |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE31595 |
Gene Expression Profiles in Stage II and III Colon Cancer. Application of a 128-gene signature |
|
| Relations |
| Reanalyzed by |
GSE119087 |
