|
| Status |
Public on Jan 29, 2024 |
| Title |
genomic DNA from MPNST; case 24 |
| Sample type |
genomic |
| |
|
| Source name |
MPNST; case 24
|
| Organism |
Homo sapiens |
| Characteristics |
gender: F
sample type: DNA extracted from FFPE tissue
study group: 1
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted from FFPE samples using Resnova MagPurix FFPE DNA Extraction Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC v1 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using Illumina iScan
|
| Description |
Final integrated diagnosis of MPNST
|
| Data processing |
RStudio (R package ChAMP v2.26.0)
|
| |
|
| Submission date |
Oct 31, 2023 |
| Last update date |
Jan 29, 2024 |
| Contact name |
Evelina Miele |
| E-mail(s) |
evelina.miele@opbg.net
|
| Organization name |
Ospedale Pediatrico Bambino Gesù
|
| Department |
Oncoematologia
|
| Street address |
Piazza di Sant'Onofrio 4
|
| City |
Rome |
| ZIP/Postal code |
00165 |
| Country |
Italy |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE246644 |
Malignant peripheral nerve sheath tumor (MPNST) and MPNST-like entities defined by DNA methylation profile in pediatric and juvenile population |
|
