|
| Status |
Public on Jul 19, 2024 |
| Title |
PTPR, DKFZ_PTPR2 |
| Sample type |
genomic |
| |
|
| Source name |
PTPR
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: papillary tumor of the pineal region
Sex: Female
age: 16
material: FFPE
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was bisulfite-converted with the EZ DNA Methylation Kitm (Zymo Research D5001)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
standard Illumina protocol
|
| |
|
| Hybridization protocol |
standard Illumina protocol
|
| Scan protocol |
Illumina iScan System according to the manufacturer's protocol
|
| Description |
Tumor
204361730066_R03C01
|
| Data processing |
R package minfi v1.40.0
Processed data file betas.tsv represents Normalized (preprocessIlumina) Average Beta for the 39 newly profiled samples and the 37 "Third-party reanalysis" samples.
|
| |
|
| Submission date |
Jan 23, 2024 |
| Last update date |
Jul 19, 2024 |
| Contact name |
Zhichao Wu |
| Organization name |
NIH/NCI
|
| Department |
Center for Cancer Research
|
| Lab |
Laboratory of Pathology
|
| Street address |
BG 10 RM 4A31 MSC 1500, 10 CENTER DR
|
| City |
BETHESDA |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE254031 |
Papillary Tumor of the Pineal Region: analysis of DNA methylation profiles and clinical outcomes in 76 cases |
|
