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| Status |
Public on Jun 06, 2024 |
| Title |
Rbpms2-mApple crosslinked (SR3) |
| Sample type |
SRA |
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| Source name |
Gonad
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| Organism |
Danio rerio |
| Characteristics |
tissue: Gonad
cell type: Germline and somatic
genotype: Wildtype
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with an Rneasy Mini Kit (Qiagen, 74104)
Libraries were generated with an Illumina Truseq RNA Library Prep kit (Illumina, 20020589)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
Basespace illumina platform was used and reads were mapped using tophate2 aligner.
Estimation of reference genes and transcript was done using cufflinks and reads were mapped to the genome (GRCz10).
Reads were aligned with the TopHat Alignment App.
GRCz10
CSV file that compiled includes tracking ids, gene loci, and FPKMs for each samples
CSV files include tracking and gene id, gene short name, tss id, locus, and FPKM for each sample
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| Submission date |
Feb 01, 2024 |
| Last update date |
Jun 06, 2024 |
| Contact name |
Florence L Marlow |
| E-mail(s) |
florence.marlow@mssm.edu
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| Organization name |
Icahn School of Medicine Mount Sinai
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| Department |
CDRB
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| Lab |
Marlow
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| Street address |
Madison Ave
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| City |
New York |
| ZIP/Postal code |
10029 |
| Country |
USA |
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| Platform ID |
GPL24995 |
| Series (1) |
| GSE254850 |
Rbpms2 promotes female fate upstream of the nutrient sensing Gator2 complex component, Mios |
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| Relations |
| BioSample |
SAMN39728990 |
| SRA |
SRX23499420 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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