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| Status |
Public on May 29, 2024 |
| Title |
rnaseh1_MO_dome_rH2AX_stacc_seq_rep1 |
| Sample type |
SRA |
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| Source name |
dome
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| Organism |
Danio rerio |
| Characteristics |
tissue: dome
genotype: Wild type
treatment: rnaseh1-MO injection
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
γH2AX stacc-seq was performed using anti-phospho-Histone H2A.X (Ser139) antibody (Millipore, JBW301) as described previously (Liu et al., 2020).
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| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NovaSeq 6000 |
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| Data processing |
bigWig
Supplementary files format and content: bigWig
Library strategy: stacc-seq
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| Submission date |
Feb 21, 2024 |
| Last update date |
May 29, 2024 |
| Contact name |
li kuan |
| E-mail(s) |
likuan@cibr.ac.cn
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| Organization name |
Tsinghua University
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| Street address |
zhongguancun
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| City |
Beijing |
| ZIP/Postal code |
100084 |
| Country |
China |
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| Platform ID |
GPL24995 |
| Series (1) |
| GSE183453 |
R-loop landscapes during parental-to-zygotic transition in zebrafish |
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| Relations |
| BioSample |
SAMN40014353 |
| SRA |
SRX23679375 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8091642_rnaseh1_MO_dome_rH2AX_stacc_seq_rep1.bw |
17.4 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Raw data are available in SRA |
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