|
Status |
Public on Feb 27, 2024 |
Title |
TF ChIP-seq from whole organism (ENCLB972LPJ) |
Sample type |
SRA |
|
|
Source name |
Caenorhabditis elegans strain OP82 (unc-119(tm4063) III; wgIs82) mixed sex L2 larva insertion targeting C. elegans ceh-16
|
Organism |
Caenorhabditis elegans |
Characteristics |
antibody: ceh-16 cell_type: whole organism biomaterial_type: whole organisms biosample encode accession: ENCBS222HUK (SAMN40084632) collection date: not applicable geographic location: not applicable encode accession: ENCBS222HUK Sex: pooled male and female dev stage: L2 larva age: unknown donor_id: ENCDO426ALQ lab: Michael Snyder, Stanford source: CGC link: ENCBS222HUK at ENCODE; https://www.encodeproject.org/ENCBS222HUK/
|
Extracted molecule |
genomic DNA |
Extraction protocol |
not provided
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer IIx |
|
|
Description |
https://www.encodeproject.org/experiments/ENCSR004JBX/ *************** biological replicate number: 2 technical replicate number: 1 description: ChIP-seq against eGFP-ceh-16 in L2 larva worms. experiment encode accession: ENCSR004JBX assay title: TF ChIP-seq assembly: ce11, ce10 possible controls: ENCSR445KQZ encode release date: 2014-03-31 lab: Michael Snyder, Stanford library encode accession: ENCLB972LPJ size range: 150-350
|
Data processing |
See GSM*_README.txt supplementary file linked below
|
|
|
Submission date |
Feb 24, 2024 |
Last update date |
Feb 27, 2024 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL13776 |
Series (1) |
GSE256550 |
TF ChIP-seq from whole organism (ENCSR004JBX) |
|
Relations |
BioSample |
SAMN40084632 |
Supplementary file |
Size |
Download |
File type/resource |
GSM8106134_ENCFF104JNX_peaks_and_background_as_input_for_IDR_ce10.bigBed |
1.2 Mb |
(ftp)(http) |
BIGBED |
GSM8106134_ENCFF317ZSD_peaks_and_background_as_input_for_IDR_ce11.bigBed |
1.2 Mb |
(ftp)(http) |
BIGBED |
GSM8106134_ENCFF377ODC_control_normalized_signal_ce10.bigWig |
9.8 Mb |
(ftp)(http) |
BIGWIG |
GSM8106134_ENCFF416DSW_control_normalized_signal_ce11.bigWig |
9.8 Mb |
(ftp)(http) |
BIGWIG |
GSM8106134_ENCFF570LRN_read-depth_normalized_signal_ce11.bigWig |
9.6 Mb |
(ftp)(http) |
BIGWIG |
GSM8106134_ENCFF778EHL_read-depth_normalized_signal_ce10.bigWig |
9.6 Mb |
(ftp)(http) |
BIGWIG |
GSM8106134_ENCFF794WAR_signal_of_unique_reads_ce11.bigWig |
9.6 Mb |
(ftp)(http) |
BIGWIG |
GSM8106134_ENCFF947SJC_peaks_and_background_as_input_for_IDR_ce10.bed.gz |
752.2 Kb |
(ftp)(http) |
BED |
GSM8106134_ENCFF977VJV_signal_of_unique_reads_ce10.bigWig |
9.6 Mb |
(ftp)(http) |
BIGWIG |
GSM8106134_ENCFF982COX_peaks_and_background_as_input_for_IDR_ce11.bed.gz |
751.3 Kb |
(ftp)(http) |
BED |
GSM8106134_ENCLB972LPJ_README.txt.gz |
1.8 Kb |
(ftp)(http) |
TXT |
Raw data are available in SRA |