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Series GSE256550

Query DataSets for GSE256550

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR004JBX)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq against eGFP-ceh-16 in L2 larva worms.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR004JBX/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 24, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL13776

Illumina Genome Analyzer IIx (Caenorhabditis elegans)

Samples (2)

GSM8106134	TF ChIP-seq from whole organism (ENCLB972LPJ)
GSM8106135	TF ChIP-seq from whole organism (ENCLB371IUF)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE256550_ENCFF012DOJ_peaks_and_background_as_input_for_IDR_ce11.bed.gz	752.9 Kb	(ftp)(http)	BED
GSE256550_ENCFF046YJC_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256550_ENCFF082NPV_peaks_and_background_as_input_for_IDR_ce10.bed.gz	752.9 Kb	(ftp)(http)	BED
GSE256550_ENCFF091CAN_optimal_IDR_thresholded_peaks_ce10.bigBed	81.4 Kb	(ftp)(http)	BIGBED
GSE256550_ENCFF173CYD_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256550_ENCFF348VYV_optimal_IDR_thresholded_peaks_ce11.bed.gz	25.2 Kb	(ftp)(http)	BED
GSE256550_ENCFF367ZGJ_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256550_ENCFF375YTY_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE256550_ENCFF519HQS_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE256550_ENCFF519WDZ_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256550_ENCFF608PXI_optimal_IDR_thresholded_peaks_ce11.bigBed	80.6 Kb	(ftp)(http)	BIGBED
GSE256550_ENCFF650SGP_optimal_IDR_thresholded_peaks_ce10.bed.gz	25.8 Kb	(ftp)(http)	BED
GSE256550_ENCFF715CCD_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE256550_ENCFF837CHZ_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE256550_RAW.tar	124.1 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA