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Status |
Public on Feb 27, 2024 |
Title |
TF ChIP-seq from whole organism (ENCLB048WMM) |
Sample type |
SRA |
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|
Source name |
Drosophila melanogaster female adult insertion targeting D. melanogaster CG14711
|
Organism |
Drosophila melanogaster |
Characteristics |
antibody: CG14711 cell_type: whole organism biomaterial_type: whole organisms biosample encode accession: ENCBS374DVJ (SAMN40086899) collection date: not applicable geographic location: not applicable encode accession: ENCBS374DVJ note: Transgenic D. mel line, stably expressing a C-terminal GFP fused to CG14711 Sex: female dev stage: adult age: unknown donor_id: ENCDO577BOZ lab: Kevin White, UChicago source: Kevin White link: ENCBS374DVJ at ENCODE; https://www.encodeproject.org/ENCBS374DVJ/
|
Extracted molecule |
genomic DNA |
Extraction protocol |
general protocol: https://www.encodeproject.org/documents/f890fde6-924c-4265-a60f-c5810401066d/@@download/attachment/modENCODE_protocols_Phenol_SPRI.pdf
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|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina HiSeq 4000 |
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|
Description |
https://www.encodeproject.org/experiments/ENCSR187IVR/ *************** biological replicate number: 4 technical replicate number: 1 description: ChIP-seq on transgenic flies expressing CG14711-eGFP fusion proteins. The IP was performed using an anti-GFP antibody. experiment encode accession: ENCSR187IVR assay title: TF ChIP-seq assembly: dm6 possible controls: ENCSR730QLJ encode release date: 2018-12-21 lab: Kevin White, UChicago library encode accession: ENCLB048WMM fragmentation methods: sonication (Bioruptor generic) size range: 200-800
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Data processing |
See GSM*_README.txt supplementary file linked below
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Submission date |
Feb 24, 2024 |
Last update date |
Feb 27, 2024 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL21306 |
Series (1) |
GSE256567 |
TF ChIP-seq from whole organism (ENCSR187IVR) |
|
Relations |
BioSample |
SAMN40086899 |