|
| Status |
Public on Oct 08, 2011 |
| Title |
human PDAC 16 (miRNA) |
| Sample type |
RNA |
| |
|
| Source name |
human pancreatic tumor
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: pancreas
disease status: pancreatic cancer
ajcc stage: 2B
grade: 2
tumor content: 50
|
| Extracted molecule |
total RNA |
| Extraction protocol |
miRNA was isolated by miRNeasy mini kit according to manufacturer’s instructions
|
| Label |
Hy3
|
| Label protocol |
As manufacturer recommended standard protocols
|
| |
|
| Hybridization protocol |
As manufacturer recommended standard protocols
|
| Scan protocol |
GenePix Personal 4100A Scanner was used for scanning.
|
| Description |
miRNA expression of human PDAC
|
| Data processing |
Data was normalized by variance stabilization normalization using vsn package (R/Bioconductor) which returned the data in log2 scale. For a probe with multiple spots, the mean was used for representing the probe signal.
|
| |
|
| Submission date |
Oct 06, 2011 |
| Last update date |
Oct 08, 2011 |
| Contact name |
Linh My Tran |
| E-mail(s) |
linhtran@ucla.edu
|
| Organization name |
University of Los Angeles
|
| Department |
Medicine - Pulmonary & Critical Care
|
| Lab |
Dubinett Lab
|
| Street address |
Box 951690, 37-131 CHS
|
| City |
Los Angeles |
| State/province |
California |
| ZIP/Postal code |
90095-1690 |
| Country |
USA |
| |
|
| Platform ID |
GPL7723 |
| Series (2) |
| GSE32678 |
Integrative Survival-Based Molecular Profiling of Human Pancreatic Cancer [miRNA] |
| GSE32688 |
Integrative Survival-Based Molecular Profiling of Human Pancreatic Cancer |
|
